Factsheet for GSMUA_Achr1P01200_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038853.1-P	Field mustard	mitochondrion	38.28	38.94
CDX82665	Canola	mitochondrion, plastid	37.99	38.82
CDY39141	Canola	mitochondrion	37.85	38.73
AT2G19280.1	Thale cress	mitochondrion	37.29	38.1
GSMUA_Achr8P16100_001	Banana	cytosol	10.31	26.74
GSMUA_Achr6P30640_001	Banana	mitochondrion, plastid	21.05	24.63
GSMUA_Achr11P...	Banana	cytosol	16.24	23.42
GSMUA_Achr1P17710_001	Banana	cytosol	19.35	22.42
GSMUA_Achr3P01360_001	Banana	mitochondrion	16.38	22.35
GSMUA_Achr1P12600_001	Banana	extracellular	10.88	22.06
GSMUA_Achr1P12220_001	Banana	mitochondrion	21.61	21.98
GSMUA_Achr6P34120_001	Banana	cytosol	15.25	21.73
GSMUA_AchrUn_...	Banana	cytosol	13.98	21.66
GSMUA_AchrUn_...	Banana	mitochondrion	17.51	21.57
GSMUA_Achr8P03570_001	Banana	mitochondrion	19.92	20.89
GSMUA_Achr1P06500_001	Banana	cytosol	14.83	20.59
GSMUA_Achr8P04810_001	Banana	mitochondrion	21.05	20.5
GSMUA_Achr1P22450_001	Banana	mitochondrion	16.1	20.36
GSMUA_Achr5P09880_001	Banana	mitochondrion	19.07	20.21
GSMUA_Achr3P04340_001	Banana	cytosol	18.64	20.06
GSMUA_Achr6P35510_001	Banana	cytosol	18.64	18.83

Protein Annotations

EnsemblPlants:GSMUA_Achr1P01200_001	EnsemblPlants:GSMUA_Achr1T01200_001	EnsemblPlantsGene:GSMUA_Achr1G01200_001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF325	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	UniParc:UPI0002962AA9	UniProt:M0RW28	MapMan:35.1	:

Description

Putative Pentatricopeptide repeat-containing protein At2g19280 [Source:GMGC_GENE;Acc:GSMUA_Achr1G01200_001]

Coordinates

chr1:-:857728..859854

Molecular Weight (calculated)

80589.8 Da

IEP (calculated)

6.852

GRAVY (calculated)

-0.044

Length

708 amino acids

Sequence
(BLAST)

001: MPCSLWRRSV QSSLALCRFD SIPISPGLPL LHRRHWALPC ESLLSDSESS SAPEDCCSHH YHSPRTTERI SYRPCRLAAS RRRYSLSRQW SCKADMMKRM
101: RANLSHRGWI LGSPNSLEVE LCERNVVALL NDLFEGSSDA ALAFYFFRLS QWYNGSKHGV RAVSTMVHIA VTGNMNHIAV KLLRSIARNV DEHSDGVQHQ
201: LVFDVLRETY SSRRVLETVY SMLVMCYVDK GMVKMAIRLV DDMRNLGMYP TIRVYNSLIK LLLESKQYEV AWQLYVEMPS SSFGSNQWIV RIVSLFIREL
301: GAHGDFDCAC KLLFEIQKYG GQADVVVYTT MINALCKWGL LKEATALLYK MLQLGISHDD VLVSSVVNGY CKAGRLVDAA HLLNSLSGIP DVFVYNSFIL
401: MLCKNGNMVE AYELFKEMFE VGLDPDSFNY TAIIDGYCRA CELDQALKTF ALMLKRGVKP TVMTYTVLIE SYCDRNDLCG AEYMLSAMKM EGVQPDVVTY
501: NTLINGYSKK GHMHRAYELK DVMEKDGVST DVVTYNILMH GLIKRGYVKE SREVFNELVR RGFSPDRITF TNVIDSYSQD GNLEEAFLIW CSMSNNEITP
601: DVVTCSALLN CFCKRQRMQD ASVLFHKMLD AGLEPDLILY NTLICGFCKE GNISEACRFM FMMNENDIFP NNLTYEALVC CFEKIGVKNA AENAAMKMQE
701: IFFEKCND

Best Arabidopsis Sequence Match ( AT2G19280.4 )
(BLAST)

001: MWVSIFNLKS SGLNHFCTRT KAFRYFWCRT FSLASLSENN SRFQTDSSRL PYSGSRYYHS SSKHFGEDFV SILKNIDVPR DCVETIRNVL VKHNWIQKYE
101: SGFSTELDQY TVIRILDDLF EETLDASIVL YFFRWSELWI GVEHSSRSIS RMIHILVSGN MNYRAVDMLL CLVKKCSGEE RSLCLVMKDL FETRIDRRVL
201: ETVFSILIDC CIRERKVNMA LKLTYKVDQF GIFPSRGVCI SLLKEILRVH GLELAREFVE HMLSRGRHLN AAVLSLFIRK YCSDGYFDKG WELLMGMKHY
301: GIRPDIVAFT VFIDKLCKAG FLKEATSVLF KLKLFGISQD SVSVSSVIDG FCKVGKPEEA IKLIHSFRLR PNIFVYSSFL SNICSTGDML RASTIFQEIF
401: ELGLLPDCVC YTTMIDGYCN LGRTDKAFQY FGALLKSGNP PSLTTSTILI GACSRFGSIS DAESVFRNMK TEGLKLDVVT YNNLMHGYGK THQLNKVFEL
501: IDEMRSAGIS PDVATYNILI HSMVVRGYID EANEIISELI RRGFVPSTLA FTDVIGGFSK RGDFQEAFIL WFYMADLRMK PDVVTCSALL HGYCKAQRME
601: KAIVLFNKLL DAGLKPDVVL YNTLIHGYCS VGDIEKACEL IGLMVQRGML PNESTHHALV LGLEGKRFVN SETHASMLLE EIIVAKWHLT SGG

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g19280 [Source:UniProtKB/Swiss-Prot;Acc:Q6NKW7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.