Factsheet for GSMUA_Achr6P35510_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	secretory
PTS1:	peroxisome
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d000093_P001	Maize	cytosol	38.66	51.23
Zm00001d023422_P001	Maize	plastid	51.5	50.42
HORVU5Hr1G042300.1	Barley	plastid	50.64	49.79
Os12t0152600-01	Rice	plastid	50.36	49.3
TraesCS5A01G128400.1	Wheat	plastid	47.22	49.26
Zm00001d044707_P001	Maize	plastid	49.93	49.16
EES09272	Sorghum	plastid	50.93	49.11
TraesCS5D01G136000.1	Wheat	plastid	46.93	48.96
TraesCS5B01G127400.1	Wheat	plastid	46.93	48.96
Zm00001d052540_P001	Maize	plastid	49.64	48.27
VIT_01s0011g04390.t01	Wine grape	plastid	49.36	48.19
KRH16451	Soybean	plastid	46.93	47.89
OQU78719	Sorghum	cytosol	52.07	47.77
KRH18049	Soybean	plastid	46.79	47.74
Bra024554.1-P	Field mustard	cytosol	22.82	47.34
Bra024552.1-P	Field mustard	cytosol	16.98	47.22
PGSC0003DMT400078379	Potato	cytosol	45.65	46.24
CDY04764	Canola	cytosol	22.54	44.63
CDY04754	Canola	cytosol	15.26	44.21
Solyc05g008560.1.1	Tomato	mitochondrion	46.36	43.1
CDY21405	Canola	cytosol	25.96	43.03
AT1G22960.1	Thale cress	mitochondrion	40.8	39.83
GSMUA_Achr8P16100_001	Banana	cytosol	13.69	35.16
CDY04753	Canola	mitochondrion, plastid	18.97	31.97
GSMUA_Achr1P06500_001	Banana	cytosol	21.26	29.22
GSMUA_AchrUn_...	Banana	mitochondrion	22.97	28.0
GSMUA_Achr3P01360_001	Banana	mitochondrion	19.83	26.78
GSMUA_Achr11P...	Banana	cytosol	18.12	25.87
GSMUA_Achr3P04340_001	Banana	cytosol	24.11	25.68
GSMUA_Achr6P30640_001	Banana	mitochondrion, plastid	21.4	24.79
GSMUA_Achr1P12600_001	Banana	extracellular	11.84	23.78
GSMUA_Achr8P04810_001	Banana	mitochondrion	24.25	23.38
GSMUA_Achr1P22450_001	Banana	mitochondrion	18.4	23.04
GSMUA_Achr8P03570_001	Banana	mitochondrion	21.97	22.81
GSMUA_Achr6P34120_001	Banana	cytosol	15.69	22.13
GSMUA_AchrUn_...	Banana	cytosol	14.27	21.88
GSMUA_Achr1P17710_001	Banana	cytosol	17.83	20.46
GSMUA_Achr1P12220_001	Banana	mitochondrion	20.26	20.4
GSMUA_Achr5P09880_001	Banana	mitochondrion	18.97	19.91
GSMUA_Achr1P01200_001	Banana	cytosol, mitochondrion	18.83	18.64

Protein Annotations

EnsemblPlants:GSMUA_Achr6P35510_001	EnsemblPlants:GSMUA_Achr6T35510_001	EnsemblPlantsGene:GSMUA_Achr6G35510_001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF724	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	UniParc:UPI000296F178	UniProt:M0TCZ4	MapMan:35.1	:

Description

Putative Pentatricopeptide repeat-containing protein At1g22960, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr6G35510_001]

Coordinates

chr6:+:33685680..33687881

Molecular Weight (calculated)

78518.7 Da

IEP (calculated)

6.968

GRAVY (calculated)

0.013

Length

701 amino acids

Sequence
(BLAST)

001: MEAKEALNLC SPSLMLFPKF KLLISTTTLA ATAAEVRPFH HLLPSIKAYY SSSSSSPVDI PPFDALVSGI LDSDPAAFTR GFRAPDSIKP LLSEPHLFLA
101: ALRSVRRRPR LALRFFRWAE SQPGFPCSEA AFCAVLQILA EGGLMRAAYS VAQRVLHLRL HGIVDLLIDG HAGPEATAPL LDLLLWLYTK CSMVELAVST
201: FYKMVAHGFL PDVKNCNRIL RILRDTAQWT EVRAIYKHMI KVGVQPTIVT FNTMLDSFCK EGKAEEALKI LGEMEDQDAG CLPNDITYNV IINGLGLFSK
301: GFVDEALGFR DEMVGFGVMP TVVTYNALIY GLCRSGRMEE AQEKFVEMGK MNLAQDVVSY NSLIYGYCRL GNVKEALCLF NHLRDAHIAP NIRTYNILID
401: GHCRLGALDG AQKFKEEMIC SGFLPDVYTY TILVNGSCKM GNLAMAKGFF DEMLQKGLEP DCHVYTTRIV GELKLGDTSK AFQLREEMKA KGITPNIVTY
501: NVLIDGLCKM GNLKEAYGLW QKMVHDGFHP NCVTYTCLIN AHCEKGHMRE AKYLFDSMLS NNLSPTVVTY TVLIHAHANK GNLEAAYGYF SKMLEENVLP
601: NEITYNALIN GLCRKHKVEL AYELFDKMQG NGLSPNKYTY TLLINENCNL GNWKEALRLY AEMHEKEIIP DFCTQNVLFK GFGEDFKHHA VKFLETDVLC
701: S

Best Arabidopsis Sequence Match ( AT1G22960.1 )
(BLAST)

001: MILCLRLCLR ASRSFFSIST TNNNNNLSRF LFRFSTLPHC AASSSSSSSN LESYYANLIL SSHGDSNKPN RKWSSHQFRL LLTDPNLLIR VLNMIRVKPE
101: IAFRFFNWIQ RQSDVKQSRQ AFAAMLEILA ENDLMSEAYL VAERSIDLGM HEIDDLLIDG SFDKLIALKL LDLLLWVYTK KSMAEKFLLS FEKMIRKGFL
201: PSVRNCNIVL KVLRDSRMMN KASAVYETMI EHGIMPTVIT FNTMLDSCFK AGDLERVDKI WLEMKRRNIE FSEVTYNILI NGFSKNGKME EARRFHGDMR
301: RSGFAVTPYS FNPLIEGYCK QGLFDDAWGV TDEMLNAGIY PTTSTYNIYI CALCDFGRID DARELLSSMA APDVVSYNTL MHGYIKMGKF VEASLLFDDL
401: RAGDIHPSIV TYNTLIDGLC ESGNLEGAQR LKEEMTTQLI FPDVITYTTL VKGFVKNGNL SMATEVYDEM LRKGIKPDGY AYTTRAVGEL RLGDSDKAFR
501: LHEEMVATDH HAPDLTIYNV RIDGLCKVGN LVKAIEFQRK IFRVGLVPDH VTYTTVIRGY LENGQFKMAR NLYDEMLRKR LYPSVITYFV LIYGHAKAGR
601: LEQAFQYSTE MKKRGVRPNV MTHNALLYGM CKAGNIDEAY RYLCKMEEEG IPPNKYSYTM LISKNCDFEK WEEVVKLYKE MLDKEIEPDG YTHRALFKHL
701: EKDHESREVE FLERLLLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g22960, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P0C7Q9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.