Factsheet for Zm00001d023422_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044707_P001	Maize	plastid	88.41	88.9
Zm00001d000093_P001	Maize	cytosol	65.36	88.47
OQU78719	Sorghum	cytosol	89.11	83.51
Zm00001d052540_P001	Maize	plastid	78.21	77.67
Os12t0152600-01	Rice	plastid	74.16	74.16
TraesCS5A01G128400.1	Wheat	plastid	67.18	71.58
TraesCS5D01G136000.1	Wheat	plastid	67.04	71.43
TraesCS5B01G127400.1	Wheat	plastid	66.76	71.13
HORVU5Hr1G042300.1	Barley	plastid	70.67	70.97
GSMUA_Achr6P35510_001	Banana	cytosol	50.42	51.5
KRH16451	Soybean	plastid	41.34	43.09
Bra024554.1-P	Field mustard	cytosol	20.11	42.6
KRH18049	Soybean	plastid	40.64	42.36
VIT_01s0011g04390.t01	Wine grape	plastid	42.46	42.34
CDY04764	Canola	cytosol	20.11	40.68
PGSC0003DMT400078379	Potato	cytosol	38.83	40.17
Bra024552.1-P	Field mustard	cytosol	14.11	40.08
CDY21405	Canola	cytosol	23.32	39.48
CDY04754	Canola	cytosol	12.99	38.43
Solyc05g008560.1.1	Tomato	mitochondrion	39.53	37.53
AT1G22960.1	Thale cress	mitochondrion	36.73	36.63
CDY04753	Canola	mitochondrion, plastid	18.16	31.25
Zm00001d039548_P001	Maize	mitochondrion	18.02	28.41
Zm00001d027800_P001	Maize	mitochondrion	25.14	27.73
Zm00001d003294_P001	Maize	plastid	20.11	27.48
Zm00001d007125_P001	Maize	endoplasmic reticulum, plastid	19.69	26.26
Zm00001d007127_P001	Maize	endoplasmic reticulum, plastid	18.58	25.53
Zm00001d010121_P001	Maize	plastid	24.58	25.47
Zm00001d007129_P001	Maize	endoplasmic reticulum, plastid	18.99	25.33
Zm00001d045319_P001	Maize	plastid	24.44	25.33
Zm00001d042911_P001	Maize	mitochondrion, plastid	14.39	25.12
Zm00001d003397_P001	Maize	endoplasmic reticulum, extracellular	16.76	24.79
Zm00001d003396_P001	Maize	endoplasmic reticulum, extracellular	16.76	24.79
Zm00001d018528_P001	Maize	cytosol	19.97	24.61
Zm00001d020436_P001	Maize	mitochondrion	21.79	24.57
Zm00001d023302_P001	Maize	mitochondrion	23.6	24.14
Zm00001d006478_P001	Maize	mitochondrion	23.6	22.68
Zm00001d048880_P001	Maize	mitochondrion	21.09	22.34
Zm00001d030479_P001	Maize	plastid	15.08	21.43
Zm00001d028107_P001	Maize	nucleus	20.67	20.73
Zm00001d009391_P001	Maize	cytosol	16.2	20.24

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:103640761	MapMan:35.1	UniProt:A0A1D6IT92	ProteinID:AQK39290.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF12854
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF724	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004DE9642	EnsemblPlantsGene:Zm00001d023422	EnsemblPlants:Zm00001d023422_P001	EnsemblPlants:Zm00001d023422_T001
SEG:seg	:	:	:	:	:

Description

Pentatricopeptide repeat-containing protein mitochondrial

Coordinates

chr10:-:5103755..5105905

Molecular Weight (calculated)

79798.9 Da

IEP (calculated)

6.265

GRAVY (calculated)

-0.032

Length

716 amino acids

Sequence
(BLAST)

001: MPFNIPHCKS QAPVSYAVAA VSSIRFSSSS SLPALVPPPP RLHEENPFAA LLASDPPPPE PLRQVLATGD VHSALRGLPG LAHQLFRWAE TTPCGFPRSA
101: SAFAAVLVPL ARANHIRVAY PVSLRALHLG LLLPLVSLLL SGPLAPAPLS LLNLLLSLST KYSKECKARD ATPDTCSTLC LSAFREMASH GVAPDVKDCN
201: KVLRVLRDAA RWDDMSAVHA EMLQLGIEPS IVTYNTLLDS FSKEGRKDKI DMLLKEMEAR GSSCLPNDVT YNVVIAGLAR KGYLEEAAEL VEEMRLSKKA
301: SSFTYNPLIT GLLARGFVKK VDDLQLEMEN EGIMPTVVTY NAMIHGLLQS GQIEAAQAKF VEMRAMGLLP DVITYNSLLN GYCKAGNQKE ALLLFGDLRR
401: AGLAPTVLTY NILIDGYCRL GDLEEARRLK EEMVEQGCLP DVYTYTILMK GSHNVCSLAM TREFFDEMLS KGLRPDCFAY NTRICAEITL GDISKSFQLR
501: EVIMLEGISS DTVTYNILID GLCKTGNLKD AEELMMQMIS NGLQPDCITY TCLIHAHCER GFLREARKFF NDMISDGLPP SAVTYTVIIH AYCRRGNLYS
601: AYGWFRKMLE EGVEPNEITY NVLIHALCRM GRTQLAYRHF YEMLERGLVP NKYTYTLLID GNCEEGNWED AMRFYFEMHQ NGIHPDYVTR KALFKGFDEG
701: HMHHAIEYLE NVVLGE

Best Arabidopsis Sequence Match ( AT1G22960.1 )
(BLAST)

001: MILCLRLCLR ASRSFFSIST TNNNNNLSRF LFRFSTLPHC AASSSSSSSN LESYYANLIL SSHGDSNKPN RKWSSHQFRL LLTDPNLLIR VLNMIRVKPE
101: IAFRFFNWIQ RQSDVKQSRQ AFAAMLEILA ENDLMSEAYL VAERSIDLGM HEIDDLLIDG SFDKLIALKL LDLLLWVYTK KSMAEKFLLS FEKMIRKGFL
201: PSVRNCNIVL KVLRDSRMMN KASAVYETMI EHGIMPTVIT FNTMLDSCFK AGDLERVDKI WLEMKRRNIE FSEVTYNILI NGFSKNGKME EARRFHGDMR
301: RSGFAVTPYS FNPLIEGYCK QGLFDDAWGV TDEMLNAGIY PTTSTYNIYI CALCDFGRID DARELLSSMA APDVVSYNTL MHGYIKMGKF VEASLLFDDL
401: RAGDIHPSIV TYNTLIDGLC ESGNLEGAQR LKEEMTTQLI FPDVITYTTL VKGFVKNGNL SMATEVYDEM LRKGIKPDGY AYTTRAVGEL RLGDSDKAFR
501: LHEEMVATDH HAPDLTIYNV RIDGLCKVGN LVKAIEFQRK IFRVGLVPDH VTYTTVIRGY LENGQFKMAR NLYDEMLRKR LYPSVITYFV LIYGHAKAGR
601: LEQAFQYSTE MKKRGVRPNV MTHNALLYGM CKAGNIDEAY RYLCKMEEEG IPPNKYSYTM LISKNCDFEK WEEVVKLYKE MLDKEIEPDG YTHRALFKHL
701: EKDHESREVE FLERLLLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g22960, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P0C7Q9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.