Factsheet for Zm00001d010121_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045319_P001	Maize	plastid	98.41	98.41
OQU75844	Sorghum	cytosol	73.08	91.65
Os06t0152500-00	Rice	plastid	78.0	77.67
TraesCS7D01G103900.1	Wheat	plastid	77.28	76.83
TraesCS7B01G006900.1	Wheat	plastid	76.56	76.12
TraesCS7A01G109000.1	Wheat	plastid	76.41	75.97
HORVU7Hr1G023200.23	Barley	cytosol	73.52	73.2
PGSC0003DMT400066275	Potato	cytosol	22.43	47.69
GSMUA_Achr3P04340_001	Banana	cytosol	43.27	45.44
VIT_03s0063g00930.t01	Wine grape	cytosol, plastid	46.16	41.86
CDX74435	Canola	mitochondrion	44.86	41.61
Bra025651.1-P	Field mustard	mitochondrion	44.72	41.48
CDY30265	Canola	mitochondrion	43.7	41.37
AT5G39710.1	Thale cress	mitochondrion	44.28	40.96
Solyc01g108410.1.1	Tomato	mitochondrion	44.57	40.16
PGSC0003DMT400066369	Potato	mitochondrion	43.99	39.63
KRG89236	Soybean	plastid	43.85	38.95
KRH49758	Soybean	plastid	34.73	34.09
Zm00001d000093_P001	Maize	cytosol	24.17	31.57
Zm00001d042911_P001	Maize	mitochondrion, plastid	18.38	30.98
Zm00001d039548_P001	Maize	mitochondrion	19.68	29.96
Zm00001d003396_P001	Maize	endoplasmic reticulum, extracellular	20.55	29.34
Zm00001d003397_P001	Maize	endoplasmic reticulum, extracellular	20.55	29.34
Zm00001d003294_P001	Maize	plastid	22.14	29.2
Zm00001d007129_P001	Maize	endoplasmic reticulum, plastid	22.58	29.05
Zm00001d027800_P001	Maize	mitochondrion	27.21	28.97
Zm00001d007125_P001	Maize	endoplasmic reticulum, plastid	22.29	28.68
Zm00001d007127_P001	Maize	endoplasmic reticulum, plastid	21.27	28.21
Zm00001d023302_P001	Maize	mitochondrion	27.21	26.86
Zm00001d006478_P001	Maize	mitochondrion	28.8	26.71
Zm00001d052540_P001	Maize	plastid	26.63	25.52
Zm00001d048880_P001	Maize	mitochondrion	24.6	25.15
Zm00001d044707_P001	Maize	plastid	25.62	24.86
Zm00001d023422_P001	Maize	plastid	25.47	24.58
Zm00001d018528_P001	Maize	cytosol	19.97	23.75
Zm00001d028107_P001	Maize	nucleus	23.88	23.11
Zm00001d009391_P001	Maize	cytosol	19.1	23.04
Zm00001d030479_P001	Maize	plastid	16.79	23.02
Zm00001d020436_P001	Maize	mitochondrion	20.55	22.36

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100193275	MapMan:35.1	ProteinID:AQK93461.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	UniProt:K7V314	PFAM:PF01535	PFAM:PF12854
PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF280	InterPro:Pentatricopeptide_repeat
SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002214157	EnsemblPlantsGene:Zm00001d010121	EnsemblPlants:Zm00001d010121_P001
EnsemblPlants:Zm00001d010121_T001	SEG:seg	:	:	:	:

Description

Pentatricopeptide repeat-containing protein

Coordinates

chr8:+:100027537..100029612

Molecular Weight (calculated)

75384.3 Da

IEP (calculated)

8.156

GRAVY (calculated)

0.108

Length

691 amino acids

Sequence
(BLAST)

001: MAAASASTRQ ATAEACSSHV HHAHLAALLN ASARLPPLPL SRLHLPLSLP TASRLVASFP PLPLLVCFLR ALRLLPSSPP RPFDSLIKSY ASLPNRASLA
101: AAALAFARSA GYVPSVLAYN AVLLALSDAS LTSARRFFDS MLSDGVAPNV YTYNILIRAL CGRGHRKEAL SILRDMRGAG CGPNVVTYNT LVAAFFRAGE
201: VDGAERLVGM MLDGGLKPNL VTFNSMVNGM CKAGKMEDAR KVFDEMMREG LAPDGVSYNT LVGGYCKAGC SHEALSVFAE MTQKGIMPDV VTFTSLIHVM
301: CKAGNLEWAV TLVRQMRERG LQMNEVTFTA LIDGFCKKGF LDDALLAVRG MRQCRIKPSV VCYNALINGY CMVGRMDEAR ELLHEMEAKG LKPDVVTYST
401: IISAYCKNCD THSAFELNQQ MLEKGVLPDA ITYSSLIRVL CEEKRLSDAH VLFKNMIKLG LQPDEFTYTS LIDGHCKEGN VERALSLHDK MVKAGVLPDV
501: VTYSVLINGL SKSARAMEAQ QLLFKLYHEE PIPANTKYDA LMHCCRKAEL KSVLALLKGF CMKGLMNEAD KVYQSMLDRN WNLDGSVYSV LIHGHCRAGN
601: VMKALSFHKQ MLQRGFAPNS TSTISLIRGL FENGMVVEAD QVIQQLLNCC SLADAEASKA LIDLNLNEGN VDAVLDVLHG MAKDGLLPSP R

Best Arabidopsis Sequence Match ( AT5G39710.1 )
(BLAST)

001: MFLTKTLIRR SLSTFASSPS DSLLADKALT FLKRHPYQLH HLSANFTPEA ASNLLLKSQN DQALILKFLN WANPHQFFTL RCKCITLHIL TKFKLYKTAQ
101: ILAEDVAAKT LDDEYASLVF KSLQETYDLC YSTSSVFDLV VKSYSRLSLI DKALSIVHLA QAHGFMPGVL SYNAVLDATI RSKRNISFAE NVFKEMLESQ
201: VSPNVFTYNI LIRGFCFAGN IDVALTLFDK METKGCLPNV VTYNTLIDGY CKLRKIDDGF KLLRSMALKG LEPNLISYNV VINGLCREGR MKEVSFVLTE
301: MNRRGYSLDE VTYNTLIKGY CKEGNFHQAL VMHAEMLRHG LTPSVITYTS LIHSMCKAGN MNRAMEFLDQ MRVRGLCPNE RTYTTLVDGF SQKGYMNEAY
401: RVLREMNDNG FSPSVVTYNA LINGHCVTGK MEDAIAVLED MKEKGLSPDV VSYSTVLSGF CRSYDVDEAL RVKREMVEKG IKPDTITYSS LIQGFCEQRR
501: TKEACDLYEE MLRVGLPPDE FTYTALINAY CMEGDLEKAL QLHNEMVEKG VLPDVVTYSV LINGLNKQSR TREAKRLLLK LFYEESVPSD VTYHTLIENC
601: SNIEFKSVVS LIKGFCMKGM MTEADQVFES MLGKNHKPDG TAYNIMIHGH CRAGDIRKAY TLYKEMVKSG FLLHTVTVIA LVKALHKEGK VNELNSVIVH
701: VLRSCELSEA EQAKVLVEIN HREGNMDVVL DVLAEMAKDG FLPNGIS

Arabidopsis Description

EMB2745Pentatricopeptide repeat-containing protein At5g39710 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIX3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.