Factsheet for Zm00001d028107_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG39937	Sorghum	cytosol, plastid	90.06	80.98
TraesCS4D01G259600.1	Wheat	cytosol	79.27	71.74
TraesCS4A01G045400.1	Wheat	plastid	74.65	71.16
Os03t0201400-02	Rice	cytosol	78.15	70.1
HORVU4Hr1G070310.1	Barley	plastid	79.69	68.06
GSMUA_Achr1P22450_001	Banana	mitochondrion	38.94	49.64
VIT_13s0019g03690.t01	Wine grape	cytosol	30.39	44.47
Bra002000.1-P	Field mustard	cytosol	18.77	44.22
KRH34922	Soybean	cytosol	28.01	43.57
PGSC0003DMT400015805	Potato	endoplasmic reticulum, extracellular	34.59	40.43
PGSC0003DMT400015807	Potato	endoplasmic reticulum, extracellular	34.59	40.43
Solyc01g111470.2.1	Tomato	plastid	40.06	38.44
CDY31404	Canola	cytosol	35.57	34.28
AT2G16880.1	Thale cress	cytosol	35.43	34.05
CDX71311	Canola	cytosol	32.77	33.48
Zm00001d003397_P001	Maize	endoplasmic reticulum, extracellular	16.67	24.59
Zm00001d003396_P001	Maize	endoplasmic reticulum, extracellular	16.67	24.59
Zm00001d003294_P001	Maize	plastid	17.79	24.24
Zm00001d000093_P001	Maize	cytosol	17.79	24.01
Zm00001d010121_P001	Maize	plastid	23.11	23.88
Zm00001d039548_P001	Maize	mitochondrion	15.13	23.79
Zm00001d045319_P001	Maize	plastid	22.97	23.73
Zm00001d027800_P001	Maize	mitochondrion	20.45	22.5
Zm00001d023302_P001	Maize	mitochondrion	21.85	22.29
Zm00001d007125_P001	Maize	endoplasmic reticulum, plastid	16.53	21.97
Zm00001d042911_P001	Maize	mitochondrion, plastid	12.61	21.95
Zm00001d052540_P001	Maize	plastid	22.13	21.91
Zm00001d006478_P001	Maize	mitochondrion	22.83	21.88
Zm00001d007129_P001	Maize	endoplasmic reticulum, plastid	16.39	21.79
Zm00001d007127_P001	Maize	endoplasmic reticulum, plastid	15.69	21.5
Zm00001d018528_P001	Maize	cytosol	17.09	21.0
Zm00001d048880_P001	Maize	mitochondrion	19.75	20.86
Zm00001d023422_P001	Maize	plastid	20.73	20.67
Zm00001d044707_P001	Maize	plastid	20.45	20.51
Zm00001d020436_P001	Maize	mitochondrion	17.37	19.53
Zm00001d030479_P001	Maize	plastid	13.59	19.25
Zm00001d009391_P001	Maize	cytosol	13.87	17.28

Protein Annotations

EnsemblPlants:Zm00001d028107_P001	EnsemblPlants:Zm00001d028107_T001	EnsemblPlantsGene:Zm00001d028107	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF871	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	ProteinID:ONL94730.1	SEG:seg
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	UniParc:UPI000843D6A8	UniProt:A0A1D6JS38	MapMan:35.1	:

Description

Pentatricopeptide repeat-containing protein

Coordinates

chr1:-:23030904..23033285

Molecular Weight (calculated)

78796.4 Da

IEP (calculated)

7.548

GRAVY (calculated)

-0.140

Length

714 amino acids

Sequence
(BLAST)

001: MDTTTPSTSV SPAAASAPAP YSDSALVSAV ADALVSASCQ SSPPPMDTLL APYLPRLTSS HHPQVIALAA ANPSLASPHT LLAYRRLFSP PSCLPSLLPL
101: LSILPYRNLL PTLLDFVPLD PLRHLHRHLL ASFPTSALAD AALSTYARLR LPHLAAQLLH SFRRRGCVRP SLQAANAVLS ALARSPSTSP QASLDAFHSL
201: IALRLHPNHY TFNLLVHTHC SKGTLADALS TLSKMQGFGL SPDAVTYNTL LNAHCRKGML GEARTLLARM KKEGIVPTRA TYNTLRSSDA LNLLEEMREK
301: GVKSSLVTHN IIVKGLCREG QLEEALGRLE MMTEEGLTPD VITYNTLIDA SCKAGNVAKA FVLMDEMVRS GLKMDTFTLN TLLYNLCKEK RYEEAEELLR
401: APPQRGFVPD EVSYGTVMAA YFKEYKPEPA LCLWDEMIKR KLTPSISTYN TLIKGLSTMG KLTEAIDKLN ELMEMGLVPD DTTYNIIIHA YCKEGDLEKA
501: FQFHNKMVEN SFKPDVVTCN TLMNGLCLYG RLEKAMKLFE SWVEKGKKVD VITYNTLIQA LCKDNDVDTA LRFFADMEVR GLQPDVFTYN VLLSALSEAG
601: RSVEAQKMLH KLNESGKLYG RFFYPSIKSS VEAVETGKDP EVKSDIESVG NTQGDDQESY NKYIKELCIG GQLKEAKAVL DEMMQKGMSV DNSTYITLME
701: GLIKRQKRQT HAAG

Best Arabidopsis Sequence Match ( AT2G16880.1 )
(BLAST)

001: MATLKPPESQ LLKTLTSILT SEKTHFLETL NPYIPQITQP LLTSLLSSPS LAKKPETLVS FFQWAQTSIP EAFPSDSPLP LISVVRSLLS HHKFADAKSL
101: LVSYIRTSDA SLSLCNSLLH PNLHLSPPPS KALFDIALSA YLHEGKPHVA LQIFQKMIRL KLKPNLLTCN TLLIGLVRYP SSFSISSARE VFDDMVKIGV
201: SLNVQTFNVL VNGYCLEGKL EDALGMLERM VSEFKVNPDN VTYNTILKAM SKKGRLSDLK ELLLDMKKNG LVPNRVTYNN LVYGYCKLGS LKEAFQIVEL
301: MKQTNVLPDL CTYNILINGL CNAGSMREGL ELMDAMKSLK LQPDVVTYNT LIDGCFELGL SLEARKLMEQ MENDGVKANQ VTHNISLKWL CKEEKREAVT
401: RKVKELVDMH GFSPDIVTYH TLIKAYLKVG DLSGALEMMR EMGQKGIKMN TITLNTILDA LCKERKLDEA HNLLNSAHKR GFIVDEVTYG TLIMGFFREE
501: KVEKALEMWD EMKKVKITPT VSTFNSLIGG LCHHGKTELA MEKFDELAES GLLPDDSTFN SIILGYCKEG RVEKAFEFYN ESIKHSFKPD NYTCNILLNG
601: LCKEGMTEKA LNFFNTLIEE REVDTVTYNT MISAFCKDKK LKEAYDLLSE MEEKGLEPDR FTYNSFISLL MEDGKLSETD ELLKKFSGKF GSMKRDLQVE
701: TEKNPATSES KEELNTEAIA YSDVIDELCS RGRLKEHSRS YTS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g16880 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.