Factsheet for Bra002000.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31404	Canola	cytosol	99.34	40.62
AT2G16880.1	Thale cress	cytosol	83.5	34.05
VIT_13s0019g03690.t01	Wine grape	cytosol	54.13	33.61
KRH34922	Soybean	cytosol	49.17	32.46
PGSC0003DMT400015805	Potato	endoplasmic reticulum, extracellular	50.16	24.88
PGSC0003DMT400015807	Potato	endoplasmic reticulum, extracellular	50.16	24.88
Bra024552.1-P	Field mustard	cytosol	18.81	22.62
GSMUA_Achr1P22450_001	Banana	mitochondrion	40.59	21.96
Solyc01g111470.2.1	Tomato	plastid	50.16	20.43
Bra024554.1-P	Field mustard	cytosol	21.45	19.23
Zm00001d028107_P001	Maize	nucleus	44.22	18.77
TraesCS4A01G045400.1	Wheat	plastid	43.89	17.76
Bra015447.1-P	Field mustard	cytosol	24.42	16.97
KXG39937	Sorghum	cytosol, plastid	43.23	16.5
TraesCS4D01G259600.1	Wheat	cytosol	42.9	16.48
Os03t0201400-02	Rice	cytosol	42.57	16.21
Bra013432.1-P	Field mustard	cytosol	25.74	15.76
HORVU4Hr1G070310.1	Barley	plastid	42.9	15.55
Bra025651.1-P	Field mustard	mitochondrion	27.39	11.14
Bra017434.1-P	Field mustard	cytosol, plastid	19.8	10.77
Bra005695.1-P	Field mustard	mitochondrion	26.07	10.66
Bra035931.1-P	Field mustard	mitochondrion	22.44	10.51
Bra015229.1-P	Field mustard	mitochondrion	19.8	9.48
Bra040883.1-P	Field mustard	endoplasmic reticulum	16.83	8.87
Bra022891.1-P	Field mustard	plastid	17.49	8.63
Bra024831.1-P	Field mustard	mitochondrion	20.46	8.47
Bra019985.1-P	Field mustard	cytosol	14.85	7.35
Bra020001.1-P	Field mustard	mitochondrion	13.53	6.83
Bra038853.1-P	Field mustard	mitochondrion	14.85	6.47
Bra028204.1-P	Field mustard	cytosol	12.21	6.24
Bra025578.1-P	Field mustard	plastid	10.56	5.14
Bra026410.1-P	Field mustard	mitochondrion	14.52	3.34

Protein Annotations

EnsemblPlants:Bra002000.1	EnsemblPlants:Bra002000.1-P	EnsemblPlantsGene:Bra002000	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	ncoils:Coil
PANTHER:PTHR24015	PANTHER:PTHR24015:SF871	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	UniParc:UPI00025442D6	UniProt:M4CCR9	MapMan:35.1	:	:

Description

AT2G16880 (E=3e-143) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA10:+:12353168..12354079

Molecular Weight (calculated)

34396.1 Da

IEP (calculated)

4.698

GRAVY (calculated)

-0.456

Length

303 amino acids

Sequence
(BLAST)

001: MMREMGQKGI KMNTITLNTI LDALCKERKL DEARSLLDSA RKRGYIVDEV SYSTLITGYF REEKVEKALE MWEEMKKIKI IPTVSTFNSL IGGLCHNGKT
101: ELAMEKFDEL AESGLLPDDT TFNSIILGYC KEGRVEKAFE FYNESVRHSF KPDSYTCNIL LNGLCKEGMT EKALNFFNSL IEEREVDTVT YNTMISGFCK
201: DRKVKEAFDL LSEMEEKKLE PDRFTYNSIV TALMEDGKLS EAEELLEKVS VKFGSAKQSL QGQTHENAES KEELNNTEGI AYSDVINELC SRGRSKGVTV
301: EVT

Best Arabidopsis Sequence Match ( AT2G16880.1 )
(BLAST)

001: MATLKPPESQ LLKTLTSILT SEKTHFLETL NPYIPQITQP LLTSLLSSPS LAKKPETLVS FFQWAQTSIP EAFPSDSPLP LISVVRSLLS HHKFADAKSL
101: LVSYIRTSDA SLSLCNSLLH PNLHLSPPPS KALFDIALSA YLHEGKPHVA LQIFQKMIRL KLKPNLLTCN TLLIGLVRYP SSFSISSARE VFDDMVKIGV
201: SLNVQTFNVL VNGYCLEGKL EDALGMLERM VSEFKVNPDN VTYNTILKAM SKKGRLSDLK ELLLDMKKNG LVPNRVTYNN LVYGYCKLGS LKEAFQIVEL
301: MKQTNVLPDL CTYNILINGL CNAGSMREGL ELMDAMKSLK LQPDVVTYNT LIDGCFELGL SLEARKLMEQ MENDGVKANQ VTHNISLKWL CKEEKREAVT
401: RKVKELVDMH GFSPDIVTYH TLIKAYLKVG DLSGALEMMR EMGQKGIKMN TITLNTILDA LCKERKLDEA HNLLNSAHKR GFIVDEVTYG TLIMGFFREE
501: KVEKALEMWD EMKKVKITPT VSTFNSLIGG LCHHGKTELA MEKFDELAES GLLPDDSTFN SIILGYCKEG RVEKAFEFYN ESIKHSFKPD NYTCNILLNG
601: LCKEGMTEKA LNFFNTLIEE REVDTVTYNT MISAFCKDKK LKEAYDLLSE MEEKGLEPDR FTYNSFISLL MEDGKLSETD ELLKKFSGKF GSMKRDLQVE
701: TEKNPATSES KEELNTEAIA YSDVIDELCS RGRLKEHSRS YTS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g16880 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.