Factsheet for HORVU4Hr1G070310.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G259600.1	Wheat	cytosol	90.79	96.2
TraesCS4A01G045400.1	Wheat	plastid	84.93	94.79
Os03t0201400-02	Rice	cytosol	79.07	83.04
KXG39937	Sorghum	cytosol, plastid	75.96	79.97
Zm00001d028107_P001	Maize	nucleus	68.06	79.69
GSMUA_Achr1P22450_001	Banana	mitochondrion	39.11	58.39
VIT_13s0019g03690.t01	Wine grape	cytosol	30.26	51.84
KRH34922	Soybean	cytosol	26.91	49.02
PGSC0003DMT400015807	Potato	endoplasmic reticulum, extracellular	33.73	46.15
PGSC0003DMT400015805	Potato	endoplasmic reticulum, extracellular	33.73	46.15
Solyc01g111470.2.1	Tomato	plastid	38.64	43.41
Bra002000.1-P	Field mustard	cytosol	15.55	42.9
CDY31404	Canola	cytosol	34.81	39.27
CDX71311	Canola	cytosol	32.42	38.77
AT2G16880.1	Thale cress	cytosol	34.45	38.76
HORVU2Hr1G019920.1	Barley	cytosol	13.52	30.21
HORVU6Hr1G084410.1	Barley	cytosol, mitochondrion	7.78	29.68
HORVU2Hr1G082620.1	Barley	plastid	17.7	29.25
HORVU1Hr1G093590.2	Barley	cytosol	8.01	28.15
HORVU7Hr1G023200.23	Barley	cytosol	22.61	27.23
HORVU4Hr1G074200.9	Barley	mitochondrion	21.41	26.25
HORVU2Hr1G019880.2	Barley	cytosol	11.24	26.11
HORVU1Hr1G042440.2	Barley	mitochondrion	17.58	25.65
HORVU3Hr1G086290.19	Barley	plastid	12.2	25.06
HORVU5Hr1G042300.1	Barley	plastid	21.05	24.68
HORVU2Hr1G046710.2	Barley	cytosol, plastid	22.85	24.68
HORVU2Hr1G080360.2	Barley	mitochondrion	14.95	24.41
HORVU5Hr1G066340.2	Barley	mitochondrion	17.94	24.19
HORVU0Hr1G013090.3	Barley	cytosol, plastid	16.75	24.18
HORVU6Hr1G087430.7	Barley	cytosol	17.34	23.5
HORVU7Hr1G087760.14	Barley	cytosol, mitochondrion	19.38	23.44
HORVU5Hr1G009510.3	Barley	cytosol	16.15	22.88
HORVU2Hr1G080860.1	Barley	plastid	17.22	22.78
HORVU7Hr1G028150.1	Barley	mitochondrion	13.64	22.57

Protein Annotations

EnsemblPlants:HORVU4Hr1G070310.1	EnsemblPlantsGene:HORVU4Hr1G070310	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR44149	PANTHER:PTHR44149:SF3
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	UniParc:UPI000B47150F	UniProt:A0A287PJG6	MapMan:35.1	:

Description

No Description!

Coordinates

chrchr4H:+:574843455..574846303

Molecular Weight (calculated)

91981.3 Da

IEP (calculated)

7.861

GRAVY (calculated)

-0.194

Length

836 amino acids

Sequence
(BLAST)

001: TAPQLGHSPA SLQGSPHHVP SSPQFPRFPP FPSPSPRRHR PPPLHLPMDT PPSTSASAAT GSDPDSALVA AVADALVSAS RLPAPVPMPT LLAAYLPRLT
101: ASHHPRVLSI AASNPALASP EPLLAYRSFL SPPSCLPSLI PLLPVLPYRH LFPLLLSFVP LDPLRHLHRH LLGHLPSTPL ADAALCAYSR LRLPHLAAQL
201: LHSLRRRIRV RPSLQAANAV LSALARSPST SPQASLDAFR SLIALRLHPN HYTFNLLVHT HCSKGTLADA LATLSTMQGF GLSPDAVTYN TLLHAHCRKG
301: MLGEARTLLA RMKKEGITPT RPTYNTLVSA YAKLGWIKQA TKVLEAMTAN GLEPDLWTYN VLIAGLCQAE KVDEAFRLKD EMERLDTLLP DVVTYNTLAD
401: ACFKWRRSSD ALRLLEEMRE KGLKPTLFTH NIIIKGLCKD GELEEALGCL KKMSDEGLAP DVITYNTLID AYCKAGNVAK AFALMDEMVG RGLKLDTFTL
501: NTVLYNLCKQ KRYEEAQGLL QSPSQRGFVP DEVSYGTVMA AYFKEYNPEP ALRLWDEMIQ RKLTPSISTY NTLIKGLGRM GRLKEAIDKL NELMEKGLVP
601: DDTTYNIIIH AYCKEGDLEN AFQFHNKMVE NSFKPDVVTC NTLMNGLCLQ GKLDKAMKLF DSWVEKGKKV DVITYNTLIH AMCKDGDVDA ALQFFADMEV
701: RGLQPDAFTY NVVLSALSEA GRPEEAQSML HKLTESGKLS QSFSSPLLKL SSVDETESAK DHKGNTEEET GGNPQDSALE ADTKLLNELC TGGQFKEAKA
801: ILDEMMQKGM SVDSSTYITL MEGLIKRQKR QTHAAG

Best Arabidopsis Sequence Match ( AT2G16880.1 )
(BLAST)

001: MATLKPPESQ LLKTLTSILT SEKTHFLETL NPYIPQITQP LLTSLLSSPS LAKKPETLVS FFQWAQTSIP EAFPSDSPLP LISVVRSLLS HHKFADAKSL
101: LVSYIRTSDA SLSLCNSLLH PNLHLSPPPS KALFDIALSA YLHEGKPHVA LQIFQKMIRL KLKPNLLTCN TLLIGLVRYP SSFSISSARE VFDDMVKIGV
201: SLNVQTFNVL VNGYCLEGKL EDALGMLERM VSEFKVNPDN VTYNTILKAM SKKGRLSDLK ELLLDMKKNG LVPNRVTYNN LVYGYCKLGS LKEAFQIVEL
301: MKQTNVLPDL CTYNILINGL CNAGSMREGL ELMDAMKSLK LQPDVVTYNT LIDGCFELGL SLEARKLMEQ MENDGVKANQ VTHNISLKWL CKEEKREAVT
401: RKVKELVDMH GFSPDIVTYH TLIKAYLKVG DLSGALEMMR EMGQKGIKMN TITLNTILDA LCKERKLDEA HNLLNSAHKR GFIVDEVTYG TLIMGFFREE
501: KVEKALEMWD EMKKVKITPT VSTFNSLIGG LCHHGKTELA MEKFDELAES GLLPDDSTFN SIILGYCKEG RVEKAFEFYN ESIKHSFKPD NYTCNILLNG
601: LCKEGMTEKA LNFFNTLIEE REVDTVTYNT MISAFCKDKK LKEAYDLLSE MEEKGLEPDR FTYNSFISLL MEDGKLSETD ELLKKFSGKF GSMKRDLQVE
701: TEKNPATSES KEELNTEAIA YSDVIDELCS RGRLKEHSRS YTS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g16880 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.