Factsheet for HORVU5Hr1G066340.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
TargetP:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G013090.3	Barley	cytosol, plastid	87.74	93.96
TraesCS5A01G229600.1	Wheat	mitochondrion	93.55	93.55
TraesCS5B01G228400.1	Wheat	plastid	95.16	90.77
TraesCS5D01G237900.1	Wheat	plastid	94.52	88.52
Os09t0417500-01	Rice	mitochondrion	73.71	73.95
Zm00001d020436_P001	Maize	mitochondrion	71.29	69.61
EER96725	Sorghum	mitochondrion, plastid	70.97	69.07
VIT_17s0000g06480.t01	Wine grape	cytosol	18.71	42.65
KRH54581	Soybean	mitochondrion	29.68	34.59
CDX87212	Canola	plastid	33.39	32.29
Bra035931.1-P	Field mustard	mitochondrion	32.42	31.07
AT5G61400.1	Thale cress	mitochondrion	32.74	31.04
Solyc06g069700.2.1	Tomato	plastid	38.55	29.65
HORVU2Hr1G019920.1	Barley	cytosol	17.58	29.14
HORVU2Hr1G082620.1	Barley	plastid	20.81	25.49
HORVU6Hr1G084410.1	Barley	cytosol, mitochondrion	8.71	24.66
HORVU3Hr1G086290.19	Barley	plastid	15.65	23.83
HORVU2Hr1G019880.2	Barley	cytosol	13.71	23.61
HORVU1Hr1G093590.2	Barley	cytosol	9.03	23.53
HORVU4Hr1G074200.9	Barley	mitochondrion	24.84	22.58
HORVU7Hr1G087760.14	Barley	cytosol, mitochondrion	25.0	22.43
HORVU1Hr1G042440.2	Barley	mitochondrion	20.48	22.16
HORVU5Hr1G042300.1	Barley	plastid	25.48	22.16
HORVU2Hr1G046710.2	Barley	cytosol, plastid	24.35	19.51
HORVU7Hr1G023200.23	Barley	cytosol	21.61	19.31
HORVU5Hr1G009510.3	Barley	cytosol	18.23	19.15
HORVU6Hr1G087430.7	Barley	cytosol	18.71	18.8
HORVU7Hr1G028150.1	Barley	mitochondrion	15.0	18.42
HORVU2Hr1G080860.1	Barley	plastid	18.39	18.04
HORVU4Hr1G070310.1	Barley	plastid	24.19	17.94
HORVU2Hr1G080360.2	Barley	mitochondrion	14.19	17.19

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A287RKC9	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:HORVU5Hr1G066340	EnsemblPlants:HORVU5Hr1G066340.2	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF793	InterPro:Pentatricopeptide_repeat
SUPFAM:SSF48452	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000B486F44	SEG:seg

Description

No Description!

Coordinates

chrchr5H:+:506314646..506316510

Molecular Weight (calculated)

67546.0 Da

IEP (calculated)

7.522

GRAVY (calculated)

0.074

Length

620 amino acids

Sequence
(BLAST)

001: PMPLSPPLRL ILSSRRRPLA THHRCLSAAA VAAAARATSR DRADHLAAAV HGLAAAKDFP HAIRLTKSLV QASSPSARPG AAAFAALAST STSPGPALGV
101: LVIALSQMAL HDEALSVFHR LRTLPALPAC NAILDVLVKA HRFDRVWKLF DEMLSRGMVP TVVTYNTLIN ACRHEGAVAK AREVWGQMVA RRIGPNVVTY
201: STMISALCDE GCIGEAEQLF FTMKETGMQP NHYTYNALMS SHCKRDGIKR ALTLYQELLK SGLVPNAVIF TTLIDGFFQV NRISDAKNIF LDMHRYGVAP
301: TVPVYNSLID GAFRSSDSQE ALTVYEDMTR LGLCPDEFTC SIIVRGLCSG GQVQVAARFL EAMQQSGINL NAAAFNALID EYCKNGNLAE ALATCTIMSE
401: IGIDANVVTY SSLIDGHSKK GKMEIAMAIY TEMIAKGVEP NVLTYTALIH GHAKDGDINA AFRLQKEMAE KGISPNSVTV SVLVDGLCRE NRIQDAVMIF
501: MKHSGQKKPA DIHTCLSNST TEEDHSIPNS VTYMTLIYGL YIDGQYHEAG KFFSCMRESG MVPDSFTYSL LIRGQCMLGY VLNAMMLYAD MLKVGVKPMT
601: TVCPDIWSRD APNDLKTVET

Best Arabidopsis Sequence Match ( AT5G61400.1 )
(BLAST)

001: MLKLLLPQHR TSVYLFKFQF FNFRFLSQSP SLSNSASSFS SSSLAEAILK CRSAEEAFKL FETSSRSRVS KSNDLQSFSA VIHVLTGAHK YTLARCLIKS
101: LIERLKRHSE PSNMSHRLFN ALEDIQSPKF SIGVFSLLIM EFLEMGLFEE ALWVSREMKC SPDSKACLSI LNGLVRRRRF DSVWVDYQLM ISRGLVPDVH
201: IYFVLFQCCF KQGLYSKKEK LLDEMTSLGI KPNVYIYTIY ILDLCRDNKM EEAEKMFELM KKHGVLPNLY TYSAMIDGYC KTGNVRQAYG LYKEILVAEL
301: LPNVVVFGTL VDGFCKAREL VTARSLFVHM VKFGVDPNLY VYNCLIHGHC KSGNMLEAVG LLSEMESLNL SPDVFTYTIL INGLCIEDQV AEANRLFQKM
401: KNERIFPSSA TYNSLIHGYC KEYNMEQALD LCSEMTASGV EPNIITFSTL IDGYCNVRDI KAAMGLYFEM TIKGIVPDVV TYTALIDAHF KEANMKEALR
501: LYSDMLEAGI HPNDHTFACL VDGFWKEGRL SVAIDFYQEN NQQRSCWNHV GFTCLIEGLC QNGYILRASR FFSDMRSCGI TPDICSYVSM LKGHLQEKRI
601: TDTMMLQCDM IKTGILPNLL VNQLLARFYQ ANGYVKSACF LTNSSRLKTV SNSC

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g61400 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLJ4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.