CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035931.1-P	Field mustard	mitochondrion	94.54	93.66
AT5G61400.1	Thale cress	mitochondrion	75.51	74.01
VIT_17s0000g06480.t01	Wine grape	cytosol	20.28	47.79
KRH54581	Soybean	mitochondrion	36.04	43.42
Zm00001d020436_P001	Maize	mitochondrion	35.41	35.75
EER96725	Sorghum	mitochondrion, plastid	34.32	34.54
Os09t0417500-01	Rice	mitochondrion	32.61	33.82
HORVU5Hr1G066340.2	Barley	mitochondrion	32.29	33.39
Solyc06g069700.2.1	Tomato	plastid	41.81	33.25
TraesCS5A01G229600.1	Wheat	mitochondrion	31.98	33.06
HORVU0Hr1G013090.3	Barley	cytosol, plastid	29.49	32.64
TraesCS5B01G228400.1	Wheat	plastid	32.61	32.15
TraesCS5D01G237900.1	Wheat	plastid	32.76	31.72
CDY10136	Canola	cytosol	14.98	26.23
CDY04764	Canola	cytosol	14.04	25.42
CDY21405	Canola	cytosol	16.69	25.3
CDY17611	Canola	cytosol	22.78	24.62
CDX86757	Canola	endoplasmic reticulum, extracellular	21.22	23.65
CDY57780	Canola	endoplasmic reticulum	21.22	23.65
CDX84733	Canola	plastid	22.62	23.62
CDX79463	Canola	plastid	22.15	23.01
CDY36644	Canola	mitochondrion	22.31	22.59
CDY51888	Canola	cytosol, mitochondrion, plastid	17.32	22.47
CDY30265	Canola	mitochondrion	25.43	22.33
CDY04754	Canola	cytosol	8.42	22.31
CDX78962	Canola	cytosol	17.16	22.22
CDX71231	Canola	mitochondrion	21.84	22.19
CDX93473	Canola	mitochondrion	21.06	22.06
CDY03072	Canola	mitochondrion	25.27	22.01
CDX94941	Canola	cytosol, plastid	21.06	21.95
CDX74435	Canola	mitochondrion	25.43	21.88
CDY47261	Canola	plastid	24.49	21.54
CDY04100	Canola	plastid	15.13	21.13
CDY17453	Canola	mitochondrion	15.13	21.13
CDX74507	Canola	cytosol	19.19	20.74
CDY11211	Canola	mitochondrion	23.87	20.65
CDY67116	Canola	cytosol	19.03	20.57
CDY42586	Canola	plastid	19.5	20.16
CDY50117	Canola	plastid	19.34	19.9
CDX93490	Canola	mitochondrion	18.56	19.83
CDY49798	Canola	mitochondrion	19.66	19.41
CDX94959	Canola	mitochondrion	18.25	19.24
CDX80791	Canola	mitochondrion	17.94	19.13
CDY31404	Canola	cytosol	21.84	18.89
CDY39141	Canola	mitochondrion	20.28	18.79
CDX94295	Canola	cytosol	5.15	18.64
CDX71311	Canola	cytosol	19.97	18.31
CDX82665	Canola	mitochondrion, plastid	19.5	18.04
CDX94298	Canola	mitochondrion	14.35	16.17
CDY04753	Canola	mitochondrion, plastid	9.36	14.42
CDX89313	Canola	mitochondrion	17.63	8.35

Protein Annotations

EnsemblPlants:CDX87212	EnsemblPlantsGene:GSBRNA2T00146145001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	ncoils:Coil	PANTHER:PTHR24015
PANTHER:PTHR24015:SF793	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	ProteinID:CDX87212	ProteinID:CDX87212.1
SEG:seg	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	UniParc:UPI0004EEE062	MapMan:35.1	:

Description

BnaC09g05270D

Coordinates

chrLK031849:+:1198608..1200533

Molecular Weight (calculated)

72922.7 Da

IEP (calculated)

8.142

GRAVY (calculated)

-0.063

Length

641 amino acids

Sequence
(BLAST)

001: MLKLLHRPST HIHKLQSFTF RSFSQPQSPS KSPPLFPSFS SSLASAILKC RSADEALKLF YTSNSNDFRS HSALIHVLTG ARSYTHARCL IKCLIETLKR
101: RPYRVFNALE DVQSSKFSNG VFSLLIMEFV EMGLFEEALW VSREMRTSPD VKACLTVLNG LVRRRRFDSV WVDYESMVSR GLVPDVYVYS VLFQCCFKQG
201: LSSKLKTLLD EMKSKEIKPN VYIYTIYIRD LWRESKMDEA EKVFDLMKKK QHGVPNLFTY SAMIGGYCKA GKLRQAYTLY KEIVVAELLP NVVIFGALVD
301: GFCKANELVA ARSLLGHMVK FGVDPNLHVY NCLIHGECRS GSLSEAMGLC SEMERLRLWP DVFTYTILIN GLCSKDQLTE GDRLFQKMKS ERIFPSSVTY
401: NSLIHGYCRE YNMEKALELC SEMTANGVEP DVVTFSTLID GYCKLRNMKD AMGLYSEMSI KGIVPDVVTY TALIDGQFKE ANVKEALKLY SDMLEAGVHP
501: NEHTFACLVD GFWKEGRVSD AIDFYLENNQ ACWNHVGFTC LIQGLCQNGY VLRATRLFSD MRSGGITPDL PSYVSMLKGH LQEKRVIDTM MLHCDMIKTG
601: VLPNLVVNQF LAMLYQENGY LRSACFLSNS ESFRNYQLVC K

Best Arabidopsis Sequence Match ( AT5G61400.1 )
(BLAST)

001: MLKLLLPQHR TSVYLFKFQF FNFRFLSQSP SLSNSASSFS SSSLAEAILK CRSAEEAFKL FETSSRSRVS KSNDLQSFSA VIHVLTGAHK YTLARCLIKS
101: LIERLKRHSE PSNMSHRLFN ALEDIQSPKF SIGVFSLLIM EFLEMGLFEE ALWVSREMKC SPDSKACLSI LNGLVRRRRF DSVWVDYQLM ISRGLVPDVH
201: IYFVLFQCCF KQGLYSKKEK LLDEMTSLGI KPNVYIYTIY ILDLCRDNKM EEAEKMFELM KKHGVLPNLY TYSAMIDGYC KTGNVRQAYG LYKEILVAEL
301: LPNVVVFGTL VDGFCKAREL VTARSLFVHM VKFGVDPNLY VYNCLIHGHC KSGNMLEAVG LLSEMESLNL SPDVFTYTIL INGLCIEDQV AEANRLFQKM
401: KNERIFPSSA TYNSLIHGYC KEYNMEQALD LCSEMTASGV EPNIITFSTL IDGYCNVRDI KAAMGLYFEM TIKGIVPDVV TYTALIDAHF KEANMKEALR
501: LYSDMLEAGI HPNDHTFACL VDGFWKEGRL SVAIDFYQEN NQQRSCWNHV GFTCLIEGLC QNGYILRASR FFSDMRSCGI TPDICSYVSM LKGHLQEKRI
601: TDTMMLQCDM IKTGILPNLL VNQLLARFYQ ANGYVKSACF LTNSSRLKTV SNSC

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g61400 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLJ4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.