CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g06480.t01	Wine grape	cytosol	28.38	55.51
CDX87212	Canola	plastid	43.42	36.04
Bra035931.1-P	Field mustard	mitochondrion	42.67	35.09
AT5G61400.1	Thale cress	mitochondrion	42.29	34.4
Os09t0417500-01	Rice	mitochondrion	35.15	30.26
TraesCS5A01G229600.1	Wheat	mitochondrion	35.15	30.16
Zm00001d020436_P001	Maize	mitochondrion	35.53	29.76
HORVU5Hr1G066340.2	Barley	mitochondrion	34.59	29.68
EER96725	Sorghum	mitochondrion, plastid	35.53	29.67
HORVU0Hr1G013090.3	Barley	cytosol, plastid	32.14	29.53
Solyc06g069700.2.1	Tomato	plastid	43.61	28.78
TraesCS5B01G228400.1	Wheat	plastid	35.15	28.77
TraesCS5D01G237900.1	Wheat	plastid	34.96	28.1
KRH29211	Soybean	cytosol	25.19	22.98
KRH34922	Soybean	cytosol	19.55	22.66
KRH14574	Soybean	plastid	27.26	22.66
KRG99196	Soybean	cytosol	22.18	22.35
KRH33556	Soybean	cytosol	8.65	22.01
KRH24548	Soybean	mitochondrion	25.38	21.67
KRH50360	Soybean	cytosol, extracellular, plastid	22.37	21.4
KRH51875	Soybean	cytosol	22.74	21.3
KRH51037	Soybean	endoplasmic reticulum, extracellular, plastid	18.42	21.12
KRG90304	Soybean	cytosol	21.43	20.32
KRH02112	Soybean	extracellular, mitochondrion	20.68	20.3
KRH16451	Soybean	plastid	26.13	20.23
KRH18049	Soybean	plastid	25.56	19.8
KRH20741	Soybean	cytosol	21.62	19.59
KRH13392	Soybean	cytosol	21.43	19.42
KRH17313	Soybean	mitochondrion	17.11	19.08
KRH29553	Soybean	mitochondrion	15.6	18.95
KRH45820	Soybean	cytosol, mitochondrion, plastid	25.56	18.33
KRH58559	Soybean	plastid	19.92	18.09
KRH72966	Soybean	mitochondrion	20.49	17.72
KRH42458	Soybean	plastid	24.81	17.58
KRH56553	Soybean	plastid	20.68	17.57
KRG89236	Soybean	plastid	25.38	17.35
KRH44246	Soybean	cytosol	15.98	17.03
KRH49758	Soybean	plastid	21.8	16.48
KRH40170	Soybean	mitochondrion	21.24	16.31
KRG93154	Soybean	plastid	25.19	14.03

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A0R0JRB2	EMBL:ACUP02003543	EnsemblPlantsGene:GLYMA_06G196100	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KRH54581	ProteinID:KRH54581	ProteinID:KRH54581.1	PFAM:PF01535
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF793	InterPro:Pentatricopeptide_repeat
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0006ED5143	:	:

Description

hypothetical protein

Coordinates

chr6:-:17601998..17603813

Molecular Weight (calculated)

59264.2 Da

IEP (calculated)

6.896

GRAVY (calculated)

0.009

Length

532 amino acids

Sequence
(BLAST)

001: MLKLVRRKGI PIINIALKQP SSPFSTSTSD ANAIIHILTS SDTFAEATFL TKQHLQNSRK HRTLCSSIFQ SLNRAKLTPQ AFDVLVLAFC QLGLVEEALW
101: QRASSWHRQD PDFDSLWEVY GDMMSRGFCP TVITYGILMN CCCAQGDFSN ARRVSNEILE RGIEPNVVIY TILIRVFCNE GQMGEAEDVF GRMRESGVVT
201: PNLYTYKTLI MDVLRKMGDL KAARNCFGYM AEFDVVPNAH AYNSLIDGYC KAGNLPEAMQ LRVEMERCGI FPDVVTYNIL IKGLCGSGRL EEATSLIEKM
301: DEVAVLANSA TYNVVIDGFY KTGDMEKAIE ACSQTTERKI EPNVITFSTL IDGFCQKGNV KAAMGLYTEM VIKGIVPDVV TYTALIDGHC KVGKTKEAFR
401: LHKEMLDAGL TPNVFTVSCV IDGLLKDGKT NDAIKLFLEK TGAGCPGGKI DSRFCSLNSV MYAILIQGLC KDGWIFKAHF QSKHMIDVMM LHADMVKMGV
501: MQNTCIYHVL SRGYRENGYL KSALMCSEHL EE

Best Arabidopsis Sequence Match ( AT5G61400.1 )
(BLAST)

001: MLKLLLPQHR TSVYLFKFQF FNFRFLSQSP SLSNSASSFS SSSLAEAILK CRSAEEAFKL FETSSRSRVS KSNDLQSFSA VIHVLTGAHK YTLARCLIKS
101: LIERLKRHSE PSNMSHRLFN ALEDIQSPKF SIGVFSLLIM EFLEMGLFEE ALWVSREMKC SPDSKACLSI LNGLVRRRRF DSVWVDYQLM ISRGLVPDVH
201: IYFVLFQCCF KQGLYSKKEK LLDEMTSLGI KPNVYIYTIY ILDLCRDNKM EEAEKMFELM KKHGVLPNLY TYSAMIDGYC KTGNVRQAYG LYKEILVAEL
301: LPNVVVFGTL VDGFCKAREL VTARSLFVHM VKFGVDPNLY VYNCLIHGHC KSGNMLEAVG LLSEMESLNL SPDVFTYTIL INGLCIEDQV AEANRLFQKM
401: KNERIFPSSA TYNSLIHGYC KEYNMEQALD LCSEMTASGV EPNIITFSTL IDGYCNVRDI KAAMGLYFEM TIKGIVPDVV TYTALIDAHF KEANMKEALR
501: LYSDMLEAGI HPNDHTFACL VDGFWKEGRL SVAIDFYQEN NQQRSCWNHV GFTCLIEGLC QNGYILRASR FFSDMRSCGI TPDICSYVSM LKGHLQEKRI
601: TDTMMLQCDM IKTGILPNLL VNQLLARFYQ ANGYVKSACF LTNSSRLKTV SNSC

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g61400 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLJ4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.