CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX94295	Canola	cytosol	20.64	58.19
VIT_12s0057g00740.t01	Wine grape	mitochondrion	58.72	55.28
GSMUA_Achr1P12600_001	Banana	extracellular	37.68	53.87
AT4G26680.1	Thale cress	mitochondrion	55.91	53.55
PGSC0003DMT400015722	Potato	cytosol	54.91	51.7
Solyc07g047620.1.1	Tomato	cytosol, mitochondrion	53.91	50.75
CDX94298	Canola	mitochondrion	57.52	50.44
HORVU6Hr1G084410.1	Barley	cytosol, mitochondrion	19.84	45.21
HORVU1Hr1G093590.2	Barley	cytosol	19.44	40.76
TraesCS2B01G343000.1	Wheat	cytosol, plastid	40.28	40.04
Os10t0363500-00	Rice	endoplasmic reticulum	41.08	40.04
Zm00001d030479_P001	Maize	plastid	40.28	39.88
TraesCS2D01G324100.1	Wheat	plastid	39.68	39.44
HORVU2Hr1G080360.2	Barley	mitochondrion	39.88	38.87
TraesCS2A01G339000.1	Wheat	cytosol	41.08	37.34
KRH17313	Soybean	mitochondrion	23.45	24.53
KRH29211	Soybean	cytosol	27.45	23.5
KRH72966	Soybean	mitochondrion	28.66	23.25
KRH50360	Soybean	cytosol, extracellular, plastid	24.25	21.76
Bra026410.1-P	Field mustard	mitochondrion	57.11	21.61
KRH51037	Soybean	endoplasmic reticulum, extracellular, plastid	19.84	21.34
KRH13392	Soybean	cytosol	25.05	21.29
CDX89313	Canola	mitochondrion	57.31	21.14
KRH51875	Soybean	cytosol	24.05	21.13
KRH24548	Soybean	mitochondrion	26.25	21.03
KRH20741	Soybean	cytosol	24.65	20.95
KRH02112	Soybean	extracellular, mitochondrion	22.44	20.66
KRH56553	Soybean	plastid	25.45	20.29
KRH29553	Soybean	mitochondrion	17.43	19.86
KRG89236	Soybean	plastid	29.66	19.02
KRG99196	Soybean	cytosol	19.24	18.18
KRH45820	Soybean	cytosol, mitochondrion, plastid	25.85	17.39
KRH14574	Soybean	plastid	22.24	17.34
KRH33556	Soybean	cytosol	7.21	17.22
KRH49758	Soybean	plastid	24.05	17.05
KRH18049	Soybean	plastid	22.85	16.59
KRH16451	Soybean	plastid	22.44	16.3
KRH42458	Soybean	plastid	24.45	16.25
KRG90304	Soybean	cytosol	18.04	16.04
KRH54581	Soybean	mitochondrion	17.03	15.98
KRH58559	Soybean	plastid	18.24	15.53
KRH40170	Soybean	mitochondrion	20.04	14.43
KRH34922	Soybean	cytosol	12.42	13.51
KRG93154	Soybean	plastid	19.84	10.37

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A0R0IPM5	EMBL:ACUP02004923	EnsemblPlantsGene:GLYMA_08G199100	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0090305	GO:GO:0090617	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KRH44246
ProteinID:KRH44246	ProteinID:KRH44246.1	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF415	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0006EDB06E	SEG:seg

Description

hypothetical protein

Coordinates

chr8:-:16082831..16084564

Molecular Weight (calculated)

56304.7 Da

IEP (calculated)

9.391

GRAVY (calculated)

-0.120

Length

499 amino acids

Sequence
(BLAST)

001: MRNIQPHRFS TLIEPPNKTP TSKPFFLPIP HRTIPEPRGQ DLDFICVAHR HVINSHWEKL LPLSTSLTPF RLKHLLLALQ NDHVSSLKLS TWVLKHNPSS
101: HTLDTHSILL HTLSKHRQFK TTQKFLTQTL SSHPPHTLFD ALLFSYRLCN SSSPLVFDSL FKTLAHTNKF RHATHIYTLM KEHGFSPTVQ SCNAFLSSLL
201: RLRRADIALA FYREIRRRSC VSPNVYTLNM IIRAYCMLGE VQKGFDMLEK MMDMGLSPNV VSFNTLISGY CNKGLFGLAL KVKSLMVENG VQPNVVTFNT
301: LINGFCKERK LHEANRVFNE MKVANVDPSV VTYNTLLNGY GQVGDSEMGV RVYEEMMRNG LKADILTYNA LILGLCKDGK TKKAAGFVRE LDKENLVPNA
401: STFSALITGQ CVRNNSERAF LIYRSMVRSG CSPNGQTFQM LISAFCKNED FDGAVQVLRD MLGRLMSPDL STMSELCDGL CRCGKNQLAL ALCSEMEVA

Best Arabidopsis Sequence Match ( AT4G26680.1 )
(BLAST)

001: MIRISIGVNR RLRYQFSSFA GYSGSENPRL FKTLGAANTP IPHRRNPEPK GQDLDFVNVA HSHLIQSDWD KLNKLSDHLD SFRVKNVLLK IQKDYLLSLE
101: FFNWAKTRNP GSHSLETHAI VLHTLTKNRK FKSAESILRD VLVNGGVDLP AKVFDALLYS YRECDSTPRV FDSLFKTFAH LKKFRNATDT FMQMKDYGFL
201: PTVESCNAYM SSLLGQGRVD IALRFYREMR RCKISPNPYT LNMVMSGYCR SGKLDKGIEL LQDMERLGFR ATDVSYNTLI AGHCEKGLLS SALKLKNMMG
301: KSGLQPNVVT FNTLIHGFCR AMKLQEASKV FGEMKAVNVA PNTVTYNTLI NGYSQQGDHE MAFRFYEDMV CNGIQRDILT YNALIFGLCK QAKTRKAAQF
401: VKELDKENLV PNSSTFSALI MGQCVRKNAD RGFELYKSMI RSGCHPNEQT FNMLVSAFCR NEDFDGASQV LREMVRRSIP LDSRTVHQVC NGLKHQGKDQ
501: LVKKLLQEME GKKFLQESFN N

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g26680, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ10]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.