Factsheet for TraesCS2D01G324100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G343000.1	Wheat	cytosol, plastid	95.02	95.02
HORVU2Hr1G080360.2	Barley	mitochondrion	90.84	89.06
TraesCS2A01G339000.1	Wheat	cytosol	94.42	86.34
HORVU6Hr1G084410.1	Barley	cytosol, mitochondrion	35.06	80.37
HORVU1Hr1G093590.2	Barley	cytosol	37.25	78.57
Os10t0363500-00	Rice	endoplasmic reticulum	73.31	71.88
Zm00001d030479_P001	Maize	plastid	67.73	67.46
GSMUA_Achr1P12600_001	Banana	extracellular	33.86	48.71
KRH44246	Soybean	cytosol	39.44	39.68
CDX94295	Canola	cytosol	13.55	38.42
VIT_12s0057g00740.t01	Wine grape	mitochondrion	39.84	37.74
PGSC0003DMT400015722	Potato	cytosol	38.05	36.04
Solyc07g047620.1.1	Tomato	cytosol, mitochondrion	37.65	35.66
AT4G26680.1	Thale cress	mitochondrion	36.06	34.74
CDX94298	Canola	mitochondrion	36.65	32.34
TraesCS2D01G326200.1	Wheat	mitochondrion	25.1	20.69
TraesCS3D01G353400.1	Wheat	cytosol	16.73	20.49
TraesCS6D01G355100.1	Wheat	plastid	24.1	20.27
TraesCS3D01G203500.2	Wheat	cytosol, mitochondrion	21.71	19.02
TraesCS2D01G336100.1	Wheat	plastid	19.72	18.89
TraesCS1D01G157200.1	Wheat	mitochondrion	21.51	18.82
TraesCS7D01G103900.1	Wheat	plastid	24.1	17.41
TraesCS2D01G229300.1	Wheat	mitochondrion	25.1	16.89
TraesCS2D01G115600.1	Wheat	cytosol, plastid	19.52	16.75
TraesCS5D01G136000.1	Wheat	plastid	22.11	16.52
TraesCS7D01G362900.1	Wheat	mitochondrion	20.32	16.48
TraesCS7D01G134400.2	Wheat	mitochondrion	21.51	16.12
TraesCS4D01G259600.1	Wheat	cytosol	24.5	15.59
Bra026410.1-P	Field mustard	mitochondrion	37.05	14.1
CDX89313	Canola	mitochondrion	37.05	13.75
TraesCS4D01G279000.1	Wheat	mitochondrion	17.13	13.25
TraesCS5D01G237900.1	Wheat	plastid	16.93	12.84

Protein Annotations

EnsemblPlants:TraesCS2D01G324100.1	EnsemblPlantsGene:TraesCS2D01G324100	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1580
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chr2D:-:417090863..417092371

Molecular Weight (calculated)

55764.3 Da

IEP (calculated)

9.418

GRAVY (calculated)

-0.025

Length

502 amino acids

Sequence
(BLAST)

001: MRPPRTLPLP HFTLPPLAGE DLAFVTALRS HLSSSPELAP SSLSRFLPQL NHLRLSHLLL SPPRVPHDVL SSLLPSPPPP LPFALLLHAL TPRRSSELLA
101: SLLPSISHHA FPELLHHLIL TARLAAGSRG TGAAVPAVEV LFSACARRNK LSQATLTFRA MRAHGLLPRV ESCNVFISAA LRLKRPEIAV SFFREMRRCC
201: ISPNMYTANM VLRAFCALGR VADAATVLDE MPDWGLDRTV VSFNTLIAAY CKEHGGLEHA LELKKRMELE GLAPSEVTYN TILHVLCKEG RMQQANRLLS
301: EMKVKRVVPN TVTYNTLIYG YVMHGDNGTA WRVHEGMVKN GVELDIITYN ALILGLCRDG KIKKAVHLFQ QLDRSKLEPN ASTFSALILG HCKAQNSERA
401: LQLLNVMKKS GFHPNYDTYK IVISTFYKNK DFEGAVDVMK ELLEVCMAPD KALLHEFFEA LSKAKKLHLA EGLQLADKGG KFIPSIYYTG DYRNNGEEKT
501: AC

Best Arabidopsis Sequence Match ( AT4G26680.1 )
(BLAST)

001: MIRISIGVNR RLRYQFSSFA GYSGSENPRL FKTLGAANTP IPHRRNPEPK GQDLDFVNVA HSHLIQSDWD KLNKLSDHLD SFRVKNVLLK IQKDYLLSLE
101: FFNWAKTRNP GSHSLETHAI VLHTLTKNRK FKSAESILRD VLVNGGVDLP AKVFDALLYS YRECDSTPRV FDSLFKTFAH LKKFRNATDT FMQMKDYGFL
201: PTVESCNAYM SSLLGQGRVD IALRFYREMR RCKISPNPYT LNMVMSGYCR SGKLDKGIEL LQDMERLGFR ATDVSYNTLI AGHCEKGLLS SALKLKNMMG
301: KSGLQPNVVT FNTLIHGFCR AMKLQEASKV FGEMKAVNVA PNTVTYNTLI NGYSQQGDHE MAFRFYEDMV CNGIQRDILT YNALIFGLCK QAKTRKAAQF
401: VKELDKENLV PNSSTFSALI MGQCVRKNAD RGFELYKSMI RSGCHPNEQT FNMLVSAFCR NEDFDGASQV LREMVRRSIP LDSRTVHQVC NGLKHQGKDQ
501: LVKKLLQEME GKKFLQESFN N

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g26680, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ10]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.