CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026410.1-P	Field mustard	mitochondrion	95.71	98.18
CDX94298	Canola	mitochondrion	39.99	95.08
CDX94295	Canola	cytosol	11.68	89.27
AT4G26680.1	Thale cress	mitochondrion	31.86	82.73
VIT_12s0057g00740.t01	Wine grape	mitochondrion	23.13	59.06
Solyc07g047620.1.1	Tomato	cytosol, mitochondrion	22.47	57.36
KRH44246	Soybean	cytosol	21.14	57.31
PGSC0003DMT400015722	Potato	cytosol	22.32	56.98
GSMUA_Achr1P12600_001	Banana	extracellular	13.08	50.72
HORVU6Hr1G084410.1	Barley	cytosol, mitochondrion	6.73	41.55
HORVU1Hr1G093590.2	Barley	cytosol	6.95	39.5
TraesCS2B01G343000.1	Wheat	cytosol, plastid	13.97	37.65
TraesCS2D01G324100.1	Wheat	plastid	13.75	37.05
Os10t0363500-00	Rice	endoplasmic reticulum	13.89	36.72
HORVU2Hr1G080360.2	Barley	mitochondrion	13.75	36.33
TraesCS2A01G339000.1	Wheat	cytosol	14.26	35.15
Zm00001d030479_P001	Maize	plastid	12.86	34.52
CDX93473	Canola	mitochondrion	10.86	24.02
CDX94941	Canola	cytosol, plastid	10.72	23.58
CDY04753	Canola	mitochondrion, plastid	7.17	23.32
CDY17611	Canola	cytosol	10.13	23.1
CDY03072	Canola	mitochondrion	12.2	22.42
CDY36644	Canola	mitochondrion	10.27	21.96
CDY47261	Canola	plastid	11.75	21.81
CDX71231	Canola	mitochondrion	10.13	21.71
CDY49798	Canola	mitochondrion	10.13	21.11
CDY30265	Canola	mitochondrion	11.16	20.68
CDY42586	Canola	plastid	9.46	20.65
CDY67116	Canola	cytosol	9.02	20.57
CDX74507	Canola	cytosol	8.94	20.4
CDY11211	Canola	mitochondrion	11.16	20.38
CDY31404	Canola	cytosol	10.94	19.97
CDX74435	Canola	mitochondrion	10.94	19.87
CDY50117	Canola	plastid	9.09	19.74
CDX71311	Canola	cytosol	10.13	19.6
CDY57780	Canola	endoplasmic reticulum	8.28	19.48
CDY17453	Canola	mitochondrion	6.58	19.39
CDY04100	Canola	plastid	6.58	19.39
CDX93490	Canola	mitochondrion	8.57	19.33
CDX86757	Canola	endoplasmic reticulum, extracellular	8.2	19.3
CDX94959	Canola	mitochondrion	8.57	19.08
CDY51888	Canola	cytosol, mitochondrion, plastid	6.95	19.03
CDX78962	Canola	cytosol	6.8	18.59
CDX80791	Canola	mitochondrion	8.06	18.14
CDX79463	Canola	plastid	8.13	17.83
CDX84733	Canola	plastid	8.06	17.75
CDX87212	Canola	plastid	8.35	17.63
CDY21405	Canola	cytosol	5.32	17.02
CDY10136	Canola	cytosol	4.51	16.67
CDY39141	Canola	mitochondrion	7.69	15.03
CDX82665	Canola	mitochondrion, plastid	7.61	14.86
CDY04764	Canola	cytosol	3.4	12.99
CDY04754	Canola	cytosol	2.0	11.16

Protein Annotations

KEGG:00860+6.1.1.17	KEGG:00970+6.1.1.17	Gene3D:1.20.1050.130	Gene3D:1.25.40.10	MapMan:17.2.7	Gene3D:2.40.240.10
Gene3D:3.40.50.620	GO:A0A078DQ18	EnsemblPlants:CDX89313	ProteinID:CDX89313	ProteinID:CDX89313.1	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0004818	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006424	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0043039	EnsemblPlantsGene:GSBRNA2T00149528001	InterPro:GST_C
InterPro:Glu-tRNA-synth_arc/euk	InterPro:Glu/Gln-tRNA-synth	InterPro:Glu/Gln-tRNA-synth_Ib_cat-dom	InterPro:Glu/Gln-tRNA-synth_Ib_codon-bd	InterPro:Glutathione-S-Trfase_C_sf	InterPro:IPR002885
InterPro:IPR011990	InterPro:IPR014729	InterPro:IPR020056	HAMAP:MF_02076	PFAM:PF00043	PFAM:PF00749
PFAM:PF03950	PFAM:PF12854	PFAM:PF13041	PRINTS:PR00987	ScanProsite:PS00178	PFscan:PS51375
PANTHER:PTHR43097	PANTHER:PTHR43097:SF8	MetaCyc:PWY-5188	InterPro:Pentatricopeptide_repeat	InterPro:Rbsml_L25/Gln-tRNA_synth_N	InterPro:Ribosomal_L25/Gln-tRNA_synth
InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF47616	SUPFAM:SSF50715	SUPFAM:SSF52374	TIGRFAMs:TIGR00463	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EF3AC4	InterPro:aa-tRNA-synth_I_CS	SEG:seg	:	:

Description

BnaA01g15800D

Coordinates

chrLK031858:-:842323..848983

Molecular Weight (calculated)

152367.0 Da

IEP (calculated)

9.193

GRAVY (calculated)

-0.410

Length

1353 amino acids

Sequence
(BLAST)

0001: MIRISTGAHR RLCFRFSTLA TYVELDRASA NPTVSKPLLS RNRNTIPIPH RSNPEPKGQD LDFVNVAHSH LIQSDWDKLE KLSNHLDSFR VKNVLLKIQK
0101: DYVLSLEFFT WVKHQSPGSH SLETNAIVLH TLTKNRKFKS AESILREILS TGGIDLPAKL FDALLYSYRE CDSTPRVFDS LFKAFAHLNK FRNATDAFVK
0201: MKEYGFFPNV ESCNAYMSSL LGQGRVYIAL RFYREMRRCK ISPNTYTLNM VISCYCRSGK LDKGVELLQD MERLGFKANN VSYNTLIAGH CEKGLLSSAW
0301: KLKNVMGKSG LQADVVTFNT LIHGFCRDGK LKEASKVFGE MKAVNVAPNT VTYNTLINGY SQQGDHEMAY RFYEDMVFKG IKRDILTYNG LILGLCKQAK
0401: TKKAAHFVKE LDKESLVPNS STFSALIMGQ CVRRNADRGF ELYRSMIRSG CHPNEQTFDV LMSAFCKNED YDGAAQVLRE MVRRSVPLDS RTVHQVCNGL
0501: EHQGKDQLAQ ELVKELEAKK SLQEPLELEY KQEKNLRFRQ LRFDLSALVD GVPRVEVGAF SVTGGSGGSV TSSASVNTGF GAGGLGAEST PLGLISFAKK
0601: MEEIKLTFPA DSPPLSVIVA LSLSSSPVTI DSSSSSSSSS SSSAVPSFVF SDGRKLTGTS VLLRYVGRSA KSLPGFYGHD AFEYSQIDEW IDYAPVFSSS
0701: GSEFKNACTC VDNYLQSRTF LVGHSLSIAD VAVWSALAGS GPRWERKSKK YQNLVRWFNS ISLEYAEPLK KVAAYTAAKK GSGKAASVAP RSKDQQASDK
0801: GKPEVDLPGA EVGKVKLRFA PEPSGYLHIG HAKAALLNKY FAERYQGEVI IRFDDTNPAK ESNEFVENLV KDIGTLGIKY ERVTYTSDYF PDLMSMAEKL
0901: MREGKAYVDD TPREQMHQER KDGTDSKCRN HTVEENLNLW REMIAGSKRG LQCCVRGKLD MQDPNKAMRD PVYYRCNPMS HHRIGDKYKI YPTYDFACPF
1001: VDSVEGITHA LRSSEYHDRN AQYYKVLEDM GLRRVEIYEF SRLNLVYTLL SKRKLLWFVQ QGKVGGWDDP RFPTVQGIVR RGLKIEALIQ FILEQGASKN
1101: LNLMEWDKLW TINKKIVDPV CPRHTAVVEE RRVLLTLTDG PDEPFVRLIP KHKKYEGAGE KETTFTKRIW IEGADASAIS VNEEVTLMDW GNAIVKEVTK
1201: DEEGRVTALS GLLNLKGSVK TTKLKLTWLP ETNELVKLTL TDFGYLITKK KLEENDELVF AKFVNKDTKK ETSALGDSNM RKLEDFPEFV NPDTKKETSA
1301: LGDSNMRNLQ RGDVIQLERK GYYRCDVPFV KSSKPIVLFS IPDGRQHQPL SAN

Best Arabidopsis Sequence Match ( AT5G26710.1 )
(BLAST)

001: MDGMKLSFPP ESPPLSVIVA LSLSASPVTI DSSAAATTVP SFVFSDGRKL NGATVLLRYV GRSAKKLPDF YGNNAFDSSQ IDEWVDYASV FSSGSEFENA
101: CGRVDKYLES STFLVGHSLS IADVAIWSAL AGTGQRWESL RKSKKYQSLV RWFNSILDEY SEVLNKVLAT YVKKGSGKPV AAPKSKDSQQ AVKGDGQDKG
201: KPEVDLPEAE IGKVKLRFAP EPSGYLHIGH AKAALLNKYF AERYQGEVIV RFDDTNPAKE SNEFVDNLVK DIGTLGIKYE KVTYTSDYFP ELMDMAEKLM
301: REGKAYVDDT PREQMQKERM DGIDSKCRNH SVEENLKLWK EMIAGSERGL QCCVRGKFNM QDPNKAMRDP VYYRCNPMSH HRIGDKYKIY PTYDFACPFV
401: DSLEGITHAL RSSEYHDRNA QYFKVLEDMG LRQVQLYEFS RLNLVFTLLS KRKLLWFVQT GLVDGWDDPR FPTVQGIVRR GLKIEALIQF ILEQGASKNL
501: NLMEWDKLWS INKRIIDPVC PRHTAVVAER RVLFTLTDGP DEPFVRMIPK HKKFEGAGEK ATTFTKSIWL EEADASAISV GEEVTLMDWG NAIVKEITKD
601: EEGRVTALSG VLNLQGSVKT TKLKLTWLPD TNELVNLTLT EFDYLITKKK LEDDDEVADF VNPNTKKETL ALGDSNMRNL KCGDVIQLER KGYFRCDVPF
701: VKSSKPIVLF SIPDGRAAK

Arabidopsis Description

Glutamate--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:O82462]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.