Factsheet for TraesCS2B01G343000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G324100.1	Wheat	plastid	95.02	95.02
HORVU2Hr1G080360.2	Barley	mitochondrion	91.24	89.45
TraesCS2A01G339000.1	Wheat	cytosol	94.62	86.52
HORVU6Hr1G084410.1	Barley	cytosol, mitochondrion	34.26	78.54
HORVU1Hr1G093590.2	Barley	cytosol	36.65	77.31
Os10t0363500-00	Rice	endoplasmic reticulum	73.71	72.27
Zm00001d030479_P001	Maize	plastid	66.93	66.67
GSMUA_Achr1P12600_001	Banana	extracellular	33.47	48.14
KRH44246	Soybean	cytosol	40.04	40.28
CDX94295	Canola	cytosol	13.94	39.55
VIT_12s0057g00740.t01	Wine grape	mitochondrion	40.24	38.11
PGSC0003DMT400015722	Potato	cytosol	38.25	36.23
Solyc07g047620.1.1	Tomato	cytosol, mitochondrion	37.65	35.66
AT4G26680.1	Thale cress	mitochondrion	36.85	35.51
CDX94298	Canola	mitochondrion	37.25	32.86
TraesCS2B01G345200.1	Wheat	mitochondrion	25.9	21.35
TraesCS6B01G408200.1	Wheat	plastid	24.9	20.94
TraesCS1B01G176600.2	Wheat	mitochondrion	22.71	19.42
TraesCS3B01G225400.1	Wheat	cytosol, mitochondrion	21.71	19.02
TraesCS2B01G133900.1	Wheat	plastid	20.32	18.96
TraesCS2B01G355200.1	Wheat	plastid	19.72	18.89
TraesCS7B01G006900.1	Wheat	plastid	24.3	17.55
TraesCS2B01G273600.1	Wheat	plastid	25.9	17.43
TraesCS5B01G127400.1	Wheat	plastid	22.51	16.82
TraesCS7B01G036200.1	Wheat	mitochondrion	21.71	16.32
TraesCS7B01G267600.1	Wheat	mitochondrion	19.52	15.56
TraesCS4B01G280500.1	Wheat	plastid	17.73	15.16
Bra026410.1-P	Field mustard	mitochondrion	37.65	14.33
CDX89313	Canola	mitochondrion	37.65	13.97
TraesCS5B01G228400.1	Wheat	plastid	17.73	13.69

Protein Annotations

EnsemblPlants:TraesCS2B01G343000.1	EnsemblPlantsGene:TraesCS2B01G343000	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1580
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr2B:-:489002495..489004003

Molecular Weight (calculated)

55677.3 Da

IEP (calculated)

9.323

GRAVY (calculated)

0.004

Length

502 amino acids

Sequence
(BLAST)

001: MRPPRALPLP HFTLPPLAGE DLAFVTALRS HLSSSPELAP SSLSRFLPQL NPLRLSHLLL SPPRVAHDLL GSLLSSPPPP LPFALLLHAI TPRRSSELLA
101: SLLPSVSHHA FPELLHHLIL TARLAAGSRG TGAAVPAVDV LFSACARRNK LSQATLTFRA MRAHGLLPRV ESCNVFISAA LRLKRPEIAV SFFREMRRCC
201: ISPNMYTANM VLRAFCALGR VADAATVLDE MADWGVDRTV VSFNTLIAAY CREHGGLEHA LELKKKMELE GLAPSEVTYN TILHVLCKEG RMQQANRLLS
301: EMKVKRVVPN TVTYNTLIYG YVMHGDNGTA RRVHEGMVKN GVELDIITYN ALILGLCRDG KIKKAVHLFQ QLDRSKLEPN ASTFSALILG YCMTQNSERA
401: LQLLKVMKKS GFHPNYDTYK IVISAFCKNK DFEGAVDVMK ELLEMCMAPD KVLLHEFFEA LSKAKKLHLA EDLWSADKGG KFIPSIYYTG DYRNNGEEKT
501: AC

Best Arabidopsis Sequence Match ( AT4G26680.1 )
(BLAST)

001: MIRISIGVNR RLRYQFSSFA GYSGSENPRL FKTLGAANTP IPHRRNPEPK GQDLDFVNVA HSHLIQSDWD KLNKLSDHLD SFRVKNVLLK IQKDYLLSLE
101: FFNWAKTRNP GSHSLETHAI VLHTLTKNRK FKSAESILRD VLVNGGVDLP AKVFDALLYS YRECDSTPRV FDSLFKTFAH LKKFRNATDT FMQMKDYGFL
201: PTVESCNAYM SSLLGQGRVD IALRFYREMR RCKISPNPYT LNMVMSGYCR SGKLDKGIEL LQDMERLGFR ATDVSYNTLI AGHCEKGLLS SALKLKNMMG
301: KSGLQPNVVT FNTLIHGFCR AMKLQEASKV FGEMKAVNVA PNTVTYNTLI NGYSQQGDHE MAFRFYEDMV CNGIQRDILT YNALIFGLCK QAKTRKAAQF
401: VKELDKENLV PNSSTFSALI MGQCVRKNAD RGFELYKSMI RSGCHPNEQT FNMLVSAFCR NEDFDGASQV LREMVRRSIP LDSRTVHQVC NGLKHQGKDQ
501: LVKKLLQEME GKKFLQESFN N

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g26680, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ10]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.