Factsheet for Zm00001d030479_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	extracellular, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	extracellular
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G324100.1	Wheat	plastid	67.46	67.73
TraesCS2B01G343000.1	Wheat	cytosol, plastid	66.67	66.93
HORVU2Hr1G080360.2	Barley	mitochondrion	67.46	66.41
Os10t0363500-00	Rice	endoplasmic reticulum	67.46	66.41
TraesCS2A01G339000.1	Wheat	cytosol	66.47	61.02
HORVU6Hr1G084410.1	Barley	cytosol, mitochondrion	25.99	59.82
HORVU1Hr1G093590.2	Barley	cytosol	27.38	57.98
GSMUA_Achr1P12600_001	Banana	extracellular	33.33	48.14
KRH44246	Soybean	cytosol	39.88	40.28
CDX94295	Canola	cytosol	13.29	37.85
VIT_12s0057g00740.t01	Wine grape	mitochondrion	38.89	36.98
PGSC0003DMT400015722	Potato	cytosol	38.49	36.6
Solyc07g047620.1.1	Tomato	cytosol, mitochondrion	37.9	36.04
AT4G26680.1	Thale cress	mitochondrion	35.32	34.17
CDX94298	Canola	mitochondrion	34.13	30.23
Zm00001d039548_P001	Maize	mitochondrion	19.05	21.15
Zm00001d042911_P001	Maize	mitochondrion, plastid	16.87	20.73
Zm00001d003396_P001	Maize	endoplasmic reticulum, extracellular	19.05	19.83
Zm00001d003397_P001	Maize	endoplasmic reticulum, extracellular	19.05	19.83
Zm00001d018528_P001	Maize	cytosol	22.62	19.62
Zm00001d009391_P001	Maize	cytosol	22.02	19.37
Zm00001d007127_P001	Maize	endoplasmic reticulum, plastid	19.44	18.81
Zm00001d007129_P001	Maize	endoplasmic reticulum, plastid	20.04	18.81
Zm00001d007125_P001	Maize	endoplasmic reticulum, plastid	19.84	18.62
Zm00001d003294_P001	Maize	plastid	19.25	18.51
Zm00001d000093_P001	Maize	cytosol	18.06	17.2
Zm00001d045319_P001	Maize	plastid	23.21	16.93
Zm00001d048880_P001	Maize	mitochondrion	22.62	16.86
Zm00001d010121_P001	Maize	plastid	23.02	16.79
Zm00001d006478_P001	Maize	mitochondrion	24.6	16.64
Zm00001d044707_P001	Maize	plastid	21.63	15.31
Zm00001d023302_P001	Maize	mitochondrion	21.23	15.29
Zm00001d023422_P001	Maize	plastid	21.43	15.08
Zm00001d052540_P001	Maize	plastid	21.43	14.98
Zm00001d020436_P001	Maize	mitochondrion	18.06	14.33
Zm00001d027800_P001	Maize	mitochondrion	18.06	14.02
Zm00001d028107_P001	Maize	nucleus	19.25	13.59
Bra026410.1-P	Field mustard	mitochondrion	34.52	13.19
CDX89313	Canola	mitochondrion	34.52	12.86

Protein Annotations

EnsemblPlants:Zm00001d030479_P001	EnsemblPlants:Zm00001d030479_T001	EnsemblPlantsGene:Zm00001d030479	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF1580	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	ProteinID:ONM00985.1	SEG:seg
TIGRFAMs:TIGR00756	UniParc:UPI0002220508	UniProt:A0A1D6KCJ2	MapMan:35.1	:	:

Description

Pentatricopeptide repeat-containing protein mitochondrial

Coordinates

chr1:+:136610641..136612155

Molecular Weight (calculated)

55952.7 Da

IEP (calculated)

9.470

GRAVY (calculated)

0.017

Length

504 amino acids

Sequence
(BLAST)

001: MPVPPAQQRT LPLPHFTLPP LTGQDHLFVA ALRSHLSASP PPAVASLSRF LPGITPLRFS HLVVLLAGRV RPPHNLLTAL LPSPPPSLPL AILLHSLPPR
101: RCAELLTSVL PSVSPRAFPD LLHHVILTAR LAAGTQRAAV VPAIDVLFSS CARDKKLSWA TLTYRAMRAH GMFPTVESCN VFISGALRLR RPEIAISFFR
201: EMRRCRVSPN VYTVNMVMRA KCALGRVVDA AQLLDEMPCW GFSRTAASFN TLIAAYCHDS GGMETVLRLK ERMEREGLVP NEVTYNTIVH GLCKEGRMHQ
301: ARRIVNEMRV KGVTPNTITF NTLIHSYVTL GDNEVAMKMH EEMMKAGLSA DLVTYNALIL GLCNEGKTWK ASQLVQELCA AKLEPNASTF SALIIGQCKK
401: QNPERALDLL NAMKKAGFQP NYYTYSILIS TFSKNKDFEG AIDVLKDMLM RCIAPDKALL HEFFEGLSKA KKLHLAADLR SVANGTRFIS DIYYTDDYRN
501: IDEE

Best Arabidopsis Sequence Match ( AT4G26680.1 )
(BLAST)

001: MIRISIGVNR RLRYQFSSFA GYSGSENPRL FKTLGAANTP IPHRRNPEPK GQDLDFVNVA HSHLIQSDWD KLNKLSDHLD SFRVKNVLLK IQKDYLLSLE
101: FFNWAKTRNP GSHSLETHAI VLHTLTKNRK FKSAESILRD VLVNGGVDLP AKVFDALLYS YRECDSTPRV FDSLFKTFAH LKKFRNATDT FMQMKDYGFL
201: PTVESCNAYM SSLLGQGRVD IALRFYREMR RCKISPNPYT LNMVMSGYCR SGKLDKGIEL LQDMERLGFR ATDVSYNTLI AGHCEKGLLS SALKLKNMMG
301: KSGLQPNVVT FNTLIHGFCR AMKLQEASKV FGEMKAVNVA PNTVTYNTLI NGYSQQGDHE MAFRFYEDMV CNGIQRDILT YNALIFGLCK QAKTRKAAQF
401: VKELDKENLV PNSSTFSALI MGQCVRKNAD RGFELYKSMI RSGCHPNEQT FNMLVSAFCR NEDFDGASQV LREMVRRSIP LDSRTVHQVC NGLKHQGKDQ
501: LVKKLLQEME GKKFLQESFN N

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g26680, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ10]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.