CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX94295	Canola	cytosol	27.42	88.14
AT4G26680.1	Thale cress	mitochondrion	75.4	82.34
VIT_12s0057g00740.t01	Wine grape	mitochondrion	53.95	57.92
Solyc07g047620.1.1	Tomato	cytosol, mitochondrion	53.6	57.55
KRH44246	Soybean	cytosol	50.44	57.52
PGSC0003DMT400015722	Potato	cytosol	53.08	56.98
GSMUA_Achr1P12600_001	Banana	extracellular	31.11	50.72
HORVU6Hr1G084410.1	Barley	cytosol, mitochondrion	15.82	41.1
CDX89313	Canola	mitochondrion	95.08	39.99
HORVU1Hr1G093590.2	Barley	cytosol	16.34	39.08
TraesCS2B01G343000.1	Wheat	cytosol, plastid	32.86	37.25
TraesCS2D01G324100.1	Wheat	plastid	32.34	36.65
Os10t0363500-00	Rice	endoplasmic reticulum	32.51	36.13
HORVU2Hr1G080360.2	Barley	mitochondrion	32.51	36.13
TraesCS2A01G339000.1	Wheat	cytosol	33.39	34.61
Zm00001d030479_P001	Maize	plastid	30.23	34.13
CDY04753	Canola	mitochondrion, plastid	16.52	22.6
CDX93473	Canola	mitochondrion	24.08	22.39
CDX94941	Canola	cytosol, plastid	24.08	22.28
CDY36644	Canola	mitochondrion	23.55	21.17
CDX71231	Canola	mitochondrion	22.85	20.6
CDY49798	Canola	mitochondrion	23.2	20.34
CDY42586	Canola	plastid	22.14	20.32
CDY67116	Canola	cytosol	21.09	20.24
CDX74507	Canola	cytosol	20.91	20.07
CDY47261	Canola	plastid	25.13	19.62
CDY50117	Canola	plastid	21.44	19.58
CDX93490	Canola	mitochondrion	20.04	19.0
CDX86757	Canola	endoplasmic reticulum, extracellular	19.16	18.96
CDY57780	Canola	endoplasmic reticulum	19.16	18.96
CDX94959	Canola	mitochondrion	20.21	18.91
CDY30265	Canola	mitochondrion	24.25	18.9
CDY03072	Canola	mitochondrion	24.25	18.75
CDY17611	Canola	cytosol	19.16	18.38
CDX74435	Canola	mitochondrion	23.73	18.12
CDY31404	Canola	cytosol	22.32	17.14
CDX79463	Canola	plastid	18.45	17.02
CDX84733	Canola	plastid	18.28	16.94
CDY17453	Canola	mitochondrion	13.53	16.78
CDY11211	Canola	mitochondrion	21.62	16.6
CDX71311	Canola	cytosol	20.39	16.6
CDY04100	Canola	plastid	13.18	16.34
CDY51888	Canola	cytosol, mitochondrion, plastid	14.06	16.19
CDX78962	Canola	cytosol	13.71	15.76
CDY39141	Canola	mitochondrion	18.1	14.88
CDX82665	Canola	mitochondrion, plastid	17.93	14.72
CDX87212	Canola	plastid	16.17	14.35
CDX80791	Canola	mitochondrion	13.88	13.14
CDY21405	Canola	cytosol	9.49	12.77
CDY10136	Canola	cytosol	7.73	12.02
CDY04764	Canola	cytosol	4.92	7.91
CDY04754	Canola	cytosol	1.58	3.72

Protein Annotations

EnsemblPlants:CDX94298	EnsemblPlantsGene:GSBRNA2T00157392001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF415
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	ProteinID:CDX94298	ProteinID:CDX94298.1	TIGRFAMs:TIGR00756
UniParc:UPI0004EEBF3A	MapMan:35.1	:	:	:	:

Description

BnaC01g18860D

Coordinates

chrLK031881:-:71851..74083

Molecular Weight (calculated)

63523.4 Da

IEP (calculated)

9.258

GRAVY (calculated)

-0.270

Length

569 amino acids

Sequence
(BLAST)

001: MIRISTSVHR RLCFRFSTFA SHGELHRASA NPTVSKPLVS RNRNTIPIPH RSNPEPKGQD LDFVNVAHSH LIQSDWDKLE KLSHHLDSFR VKNILLKIQK
101: DYVLSLEFFN WVKHQSPGSH SLETNAVVLH TLTKNRKFKS AESILREILS TGGIDLPATL FDALLYSYRE CDSTPRVFDS LFKAFAHLNK FRNATDTFVK
201: MKEYGFFPNV ESCNAYMSSL LGQGRVDIAL RFYREMRRCK ISPNTYTLNM VISCYCRSGK LDKGVELLQD MERLGFKANN VSYNTLIAGH CEKGLLSSAW
301: KLKNVMGKSG LQPDVVTFNT LIHGFCRDVK LKEASKVFGE MKAVNVAPNT VTYNTLINGY GQQGDHEMAY RFYEDMVFKG IKRDILTYNG LILGLCKQAK
401: TKKAAHFVKE LDKESLVPNS STFTALIMGQ CVRRNADRGF ELYRSMIRSG CHPNEQTFDV LMSAFCKNED YDGAAQVLRE MVRRSVPLDS RTVHEVCNGL
501: EHQGKDQLAQ ELVKELEAKK SLQEPLGAGA LVDGVPGVEV GAFAVTGASG GLVTSASVNT GFGAGGLGS

Best Arabidopsis Sequence Match ( AT4G26680.1 )
(BLAST)

001: MIRISIGVNR RLRYQFSSFA GYSGSENPRL FKTLGAANTP IPHRRNPEPK GQDLDFVNVA HSHLIQSDWD KLNKLSDHLD SFRVKNVLLK IQKDYLLSLE
101: FFNWAKTRNP GSHSLETHAI VLHTLTKNRK FKSAESILRD VLVNGGVDLP AKVFDALLYS YRECDSTPRV FDSLFKTFAH LKKFRNATDT FMQMKDYGFL
201: PTVESCNAYM SSLLGQGRVD IALRFYREMR RCKISPNPYT LNMVMSGYCR SGKLDKGIEL LQDMERLGFR ATDVSYNTLI AGHCEKGLLS SALKLKNMMG
301: KSGLQPNVVT FNTLIHGFCR AMKLQEASKV FGEMKAVNVA PNTVTYNTLI NGYSQQGDHE MAFRFYEDMV CNGIQRDILT YNALIFGLCK QAKTRKAAQF
401: VKELDKENLV PNSSTFSALI MGQCVRKNAD RGFELYKSMI RSGCHPNEQT FNMLVSAFCR NEDFDGASQV LREMVRRSIP LDSRTVHQVC NGLKHQGKDQ
501: LVKKLLQEME GKKFLQESFN N

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g26680, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ10]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.