CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028204.1-P	Field mustard	cytosol	100.0	100.0
CDY67116	Canola	cytosol	97.3	97.3
AT5G38730.1	Thale cress	cytosol	87.02	86.58
VIT_14s0083g00550.t01	Wine grape	cytosol	58.35	58.64
KRH20741	Soybean	cytosol	55.82	56.39
KRH13392	Soybean	cytosol	55.31	55.88
Solyc04g050550.1.1	Tomato	cytosol	54.64	55.1
Zm00001d018528_P001	Maize	cytosol	44.86	45.78
GSMUA_Achr1P17710_001	Banana	cytosol	46.21	44.84
TraesCS6B01G408200.1	Wheat	plastid	45.03	44.72
TraesCS6A01G371200.1	Wheat	plastid	44.86	44.56
TraesCS6D01G355100.1	Wheat	plastid	44.69	44.39
EES07796	Sorghum	cytosol, endoplasmic reticulum, extracellular	44.18	43.67
Os02t0827900-03	Rice	plastid	42.33	43.28
HORVU6Hr1G087430.7	Barley	cytosol	44.18	42.46
CDX86757	Canola	endoplasmic reticulum, extracellular	24.11	24.87
CDX94959	Canola	mitochondrion	25.13	24.51
CDX93490	Canola	mitochondrion	24.79	24.5
CDY57780	Canola	endoplasmic reticulum	23.1	23.83
CDY36644	Canola	mitochondrion	24.79	23.22
CDX71231	Canola	mitochondrion	24.62	23.14
CDX84733	Canola	plastid	23.78	22.96
CDY49798	Canola	mitochondrion	25.13	22.96
CDX93473	Canola	mitochondrion	23.44	22.71
CDX94941	Canola	cytosol, plastid	23.44	22.6
CDX79463	Canola	plastid	23.27	22.37
CDY42586	Canola	plastid	23.1	22.1
CDY50117	Canola	plastid	23.1	21.99
CDY04753	Canola	mitochondrion, plastid	15.35	21.88
CDY30265	Canola	mitochondrion	26.64	21.64
CDY47261	Canola	plastid	26.48	21.54
CDX74435	Canola	mitochondrion	26.64	21.21
CDX94298	Canola	mitochondrion	20.07	20.91
CDY21405	Canola	cytosol	14.84	20.8
CDY17611	Canola	cytosol	20.74	20.74
CDY51888	Canola	cytosol, mitochondrion, plastid	17.2	20.65
CDY10136	Canola	cytosol	12.65	20.49
CDY17453	Canola	mitochondrion	15.85	20.48
CDX94295	Canola	cytosol	6.07	20.34
CDY04100	Canola	plastid	15.68	20.26
CDY11211	Canola	mitochondrion	24.79	19.84
CDX78962	Canola	cytosol	16.53	19.8
CDY39141	Canola	mitochondrion	23.1	19.8
CDX82665	Canola	mitochondrion, plastid	22.93	19.62
CDY03072	Canola	mitochondrion	23.95	19.29
CDX87212	Canola	plastid	20.74	19.19
CDY31404	Canola	cytosol	23.61	18.89
CDX80791	Canola	mitochondrion	18.55	18.3
CDX71311	Canola	cytosol	20.74	17.6
CDY04764	Canola	cytosol	10.46	17.51
CDY04754	Canola	cytosol	5.4	13.22
CDX89313	Canola	mitochondrion	20.4	8.94

Protein Annotations

EnsemblPlants:CDX74507	EnsemblPlantsGene:GSBRNA2T00114405001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF279
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	ProteinID:CDX74507
ProteinID:CDX74507.1	SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI0002544796	MapMan:35.1	:

Description

BnaA04g08820D

Coordinates

chrLK031801:-:931999..933780

Molecular Weight (calculated)

67367.0 Da

IEP (calculated)

8.703

GRAVY (calculated)

-0.148

Length

593 amino acids

Sequence
(BLAST)

001: MVNIASANRE ALIAQSICGT ILKGNWKNIL KHKLDSGLLT SSITTQVLSE LSSYGGPSLA LSFFTWSDSI PSCKHTLQSS WKMILILTKH NYFKTAHQLL
101: DKLSQRELLS SPLVLRSLLN GVSEDPEVLS HVFSWMIIYY AKSGMIRDSI EVFEQIRSCG LRPHLQACTV LLNSLVKERL TDSVWKVFKK MGKLGVVANI
201: HLYNVLVHAC SKSGDPERAE KLLSEMEERG VFPDLCTYNT LISVYCRKGM HYEALSVQDR MQRSGIGPDI VTYNSLIHGF CREGRMREAT RLFREIKGVV
301: TANHVTYTTL IDGYCRTNDI DEALRLREVM EARGFSPGVV TYNSILHKLC EDGRIREANR LLTEMSGKKI EPDNITCNTL INAYCKIGDM VSAVKVKKKM
401: VDSGLKLDMY SYKALIHGFC KALEMDNAKE ELFSMLEKGL SPGYSTYSWL VDGFYDQNKQ DEISKLPEEF EKRGLCPDVA LYRGLIRRIC KLEQVDHAKV
501: LLDSMEKKGL MGDSVIYTTM AYAYWRTGKV TEASALFDIM YNRRLMVNLK LYKSLSASYA GDNEVLIFFW SHVRDRSLIS KSILRDMNRS EVL

Best Arabidopsis Sequence Match ( AT5G38730.1 )
(BLAST)

001: MVNLLSANRE ALIAQSICAT VLKGNWKNIL KHKVDSGLLK SAITTQVISE LSLFSGYGGP SLSWSFFIWT DSLPSSKHSL QSSWKMILIL TKHKHFKTAH
101: QLLDKLAQRE LLSSPLVLRS LVGGVSEDPE DVSHVFSWLM IYYAKAGMIN DSIVVFEQIR SCGLKPHLQA CTVLLNSLVK QRLTDTVWKI FKKMVKLGVV
201: ANIHVYNVLV HACSKSGDPE KAEKLLSEME EKGVFPDIFT YNTLISVYCK KSMHFEALSV QDRMERSGVA PNIVTYNSFI HGFSREGRMR EATRLFREIK
301: DDVTANHVTY TTLIDGYCRM NDIDEALRLR EVMESRGFSP GVVTYNSILR KLCEDGRIRE ANRLLTEMSG KKIEPDNITC NTLINAYCKI EDMVSAVKVK
401: KKMIESGLKL DMYSYKALIH GFCKVLELEN AKEELFSMIE KGFSPGYATY SWLVDGFYNQ NKQDEITKLL EEFEKRGLCA DVALYRGLIR RICKLEQVDY
501: AKVLFESMEK KGLVGDSVIF TTMAYAYWRT GKVTEASALF DVMYNRRLMV NLKLYKSISA SYAGDNDVLR FFWSHVGDRC LISKSILREM NRSEVL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g38730 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKR3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.