CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78962	Canola	cytosol	97.37	97.17
AT4G19890.1	Thale cress	plastid	92.92	65.48
KRH40170	Soybean	mitochondrion	66.19	47.19
VIT_01s0011g01910.t01	Wine grape	mitochondrion	67.21	46.89
Solyc02g068890.2.1	Tomato	mitochondrion	62.35	43.02
PGSC0003DMT400026741	Potato	mitochondrion	62.15	42.88
GSMUA_Achr1P12220_001	Banana	mitochondrion	56.88	40.37
Os11t0607100-01	Rice	mitochondrion	54.05	39.79
TraesCS7D01G134400.2	Wheat	mitochondrion	53.44	39.4
TraesCS7B01G036200.1	Wheat	mitochondrion	53.04	39.22
Zm00001d048880_P001	Maize	mitochondrion	53.64	39.2
TraesCS7A01G134800.1	Wheat	mitochondrion	53.24	39.14
HORVU7Hr1G028150.1	Barley	mitochondrion	36.84	36.04
OQU83816	Sorghum	mitochondrion	32.19	35.81
CDY10136	Canola	cytosol	18.83	25.41
CDY21405	Canola	cytosol	20.45	23.88
CDY17611	Canola	cytosol	28.14	23.44
CDY57780	Canola	endoplasmic reticulum	26.72	22.96
CDX86757	Canola	endoplasmic reticulum, extracellular	26.72	22.96
CDX94295	Canola	cytosol	8.1	22.6
CDY04100	Canola	plastid	20.04	21.57
CDY17453	Canola	mitochondrion	20.04	21.57
CDY04764	Canola	cytosol	15.38	21.47
CDX79463	Canola	plastid	24.9	19.94
CDX84733	Canola	plastid	24.7	19.87
CDY30265	Canola	mitochondrion	28.95	19.59
CDY04754	Canola	cytosol	9.51	19.42
CDX74435	Canola	mitochondrion	28.54	18.93
CDY31404	Canola	cytosol	28.14	18.76
CDY03072	Canola	mitochondrion	27.94	18.75
CDY47261	Canola	plastid	26.72	18.11
CDX71311	Canola	cytosol	25.1	17.74
CDY67116	Canola	cytosol	21.05	17.54
CDX93473	Canola	mitochondrion	21.46	17.32
CDX87212	Canola	plastid	22.47	17.32
CDX71231	Canola	mitochondrion	22.06	17.27
CDX94941	Canola	cytosol, plastid	21.46	17.24
CDY36644	Canola	mitochondrion	22.06	17.22
CDX74507	Canola	cytosol	20.65	17.2
CDY39141	Canola	mitochondrion	22.87	16.33
CDX82665	Canola	mitochondrion, plastid	22.27	15.87
CDY11211	Canola	mitochondrion	23.68	15.79
CDX93490	Canola	mitochondrion	18.62	15.33
CDX80791	Canola	mitochondrion	18.22	14.97
CDX94959	Canola	mitochondrion	18.22	14.8
CDY04753	Canola	mitochondrion, plastid	11.94	14.18
CDY50117	Canola	plastid	17.81	14.13
CDX94298	Canola	mitochondrion	16.19	14.06
CDY49798	Canola	mitochondrion	18.22	13.87
CDY42586	Canola	plastid	17.21	13.71
CDX89313	Canola	mitochondrion	19.03	6.95

Protein Annotations

EnsemblPlants:CDY51888	EnsemblPlantsGene:GSBRNA2T00004465001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF325
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY51888	ProteinID:CDY51888.1	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	UniParc:UPI0004EDBCE5	UniProt:A0A078IS39	MapMan:35.1	:	:

Description

BnaC01g41290DBnaC01g41290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IS39]

Coordinates

chrLK033037:-:47483..48967

Molecular Weight (calculated)

55802.1 Da

IEP (calculated)

8.779

GRAVY (calculated)

-0.183

Length

494 amino acids

Sequence
(BLAST)

001: MSVRGVRPDS NSFKLMVIGC FRDGKILEAD RWLNGMIQRG FVPDNATCTL IISALCENGL VNRAIWYFRK MVDLGLKPNL INFTSLIDGL CKKGSIKQAF
101: EMLEEMVRVG WKPNVYTHTA LIDGLCKRGW TERAFRLFLK LVRSDCYKPN VHTYTSMIGG YCKEDKLNRA EMLFSRMKEQ GLLPNVNTYT TLIDGHCKAG
201: NFDRAYELMN LMGDEGFSPN IYTYNAVVDS LCKKSRASEA YELLNKAFSC GLEADGVTYT ILIQEQCKQN DIKQALAFFC RMNKTGFEAD MRLNNILIAA
301: FCRQKKMKES EKLFGYVVSL GLVPTKETYT SMISGYCKEG DIDLALKYFH NMKRHGCVPD SFTYGSLISG LCKKSMVDEA CKLYEAMIDK GLSPSEVTRV
401: TLAYEYCKRN DSANAMMLLE PLDKKLWIRT VRTLIRKLCS EKKVGVAALF YQKLLEKDGS PDRVTLAAFT TACSESGKNN LVTDLTERVS RGVG

Best Arabidopsis Sequence Match ( AT4G19890.1 )
(BLAST)

001: MLSLLLPKSN RFLLRTFEIP NSLCSLFFFR LISSDHESSD LSLPSSPSSS PSQCLVKSVC SLVCTSYLRQ NHVVSSPHRV NLDFDANSLT HEQAITVVAS
101: LASESGSMVA LCFFYWAVGF EKFRHFMRLY LVTADSLLAN GNLQKAHEVM RCMLRNFSEI GRLNEAVGMV MDMQNQGLTP SSITMNCVLE IAVELGLIEY
201: AENVFDEMSV RGVVPDSSSY KLMVIGCFRD GKIQEADRWL TGMIQRGFIP DNATCTLILT ALCENGLVNR AIWYFRKMID LGFKPNLINF TSLIDGLCKK
301: GSIKQAFEML EEMVRNGWKP NVYTHTALID GLCKRGWTEK AFRLFLKLVR SDTYKPNVHT YTSMIGGYCK EDKLNRAEML FSRMKEQGLF PNVNTYTTLI
401: NGHCKAGSFG RAYELMNLMG DEGFMPNIYT YNAAIDSLCK KSRAPEAYEL LNKAFSCGLE ADGVTYTILI QEQCKQNDIN QALAFFCRMN KTGFEADMRL
501: NNILIAAFCR QKKMKESERL FQLVVSLGLI PTKETYTSMI SCYCKEGDID LALKYFHNMK RHGCVPDSFT YGSLISGLCK KSMVDEACKL YEAMIDRGLS
601: PPEVTRVTLA YEYCKRNDSA NAMILLEPLD KKLWIRTVRT LVRKLCSEKK VGVAALFFQK LLEKDSSADR VTLAAFTTAC SESGKNNLVT DLTERISRGV
701: G

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g19890 [Source:UniProtKB/Swiss-Prot;Acc:P0C8Q3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.