Factsheet for HORVU7Hr1G028150.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU83816	Sorghum	mitochondrion	62.97	71.62
TraesCS7A01G134800.1	Wheat	mitochondrion	92.48	69.49
TraesCS7B01G036200.1	Wheat	mitochondrion	91.49	69.16
TraesCS7D01G134400.2	Wheat	mitochondrion	91.68	69.1
Os11t0607100-01	Rice	mitochondrion	76.24	57.38
Zm00001d048880_P001	Maize	mitochondrion	72.87	54.44
GSMUA_Achr1P12220_001	Banana	mitochondrion	53.47	38.79
CDY51888	Canola	cytosol, mitochondrion, plastid	36.04	36.84
Bra013432.1-P	Field mustard	cytosol	36.04	36.77
CDX78962	Canola	cytosol	36.04	36.77
KRH40170	Soybean	mitochondrion	48.51	35.35
VIT_01s0011g01910.t01	Wine grape	mitochondrion	48.71	34.75
AT4G19890.1	Thale cress	plastid	46.53	33.52
Solyc02g068890.2.1	Tomato	mitochondrion	44.75	31.56
PGSC0003DMT400026741	Potato	mitochondrion	44.55	31.42
HORVU6Hr1G084410.1	Barley	cytosol, mitochondrion	12.28	28.31
HORVU1Hr1G093590.2	Barley	cytosol	11.68	24.79
HORVU3Hr1G086290.19	Barley	plastid	18.22	22.6
HORVU2Hr1G019920.1	Barley	cytosol	16.24	21.93
HORVU2Hr1G080360.2	Barley	mitochondrion	20.99	20.7
HORVU2Hr1G082620.1	Barley	plastid	19.41	19.37
HORVU6Hr1G087430.7	Barley	cytosol	22.97	18.8
HORVU1Hr1G042440.2	Barley	mitochondrion	21.19	18.67
HORVU2Hr1G080860.1	Barley	plastid	22.97	18.35
HORVU2Hr1G019880.2	Barley	cytosol	12.87	18.06
HORVU5Hr1G009510.3	Barley	cytosol	20.59	17.63
HORVU7Hr1G023200.23	Barley	cytosol	23.37	17.0
HORVU2Hr1G046710.2	Barley	cytosol, plastid	24.75	16.15
HORVU5Hr1G042300.1	Barley	plastid	21.58	15.29
HORVU5Hr1G066340.2	Barley	mitochondrion	18.42	15.0
HORVU0Hr1G013090.3	Barley	cytosol, plastid	17.03	14.85
HORVU7Hr1G087760.14	Barley	cytosol, mitochondrion	20.0	14.62
HORVU4Hr1G074200.9	Barley	mitochondrion	19.6	14.52
HORVU4Hr1G070310.1	Barley	plastid	22.57	13.64

Protein Annotations

EnsemblPlants:HORVU7Hr1G028150.1	EnsemblPlantsGene:HORVU7Hr1G028150	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF325
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF81901	TIGRFAMs:TIGR00756
UniParc:UPI000B46BC9B	UniProt:A0A287VUQ1	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chrchr7H:+:50539819..50543972

Molecular Weight (calculated)

56047.1 Da

IEP (calculated)

9.535

GRAVY (calculated)

-0.161

Length

505 amino acids

Sequence
(BLAST)

001: RSSNSRAGGS SMQMLSRHRH RHGRRLVHFV LKPPPFSTTN AASAPPPPPP PVCTPDAAPL VFSLRDHDPG ALAPDDAIAA LSSLAESDGS AAALAFFRRL
101: AARPDARHLM RLYVTAATAF VARGSLPMAH EAMRRMVAAF AEAGRLPEAA DMVFEMRSHG LPFCVETANW ILTAGLHSRN FAYARKVFDG MVTRGGVCPD
201: ARSFRALVLG CCREGRVEEV EALLAAMWGQ GFCLDNATCT VVVRTFCKKG RFRDVSGFFR RMLEMGTPPN VVNYTVWIDG LCKRGHVKQA FRVLEEMVGK
301: GLKPNVYTHT SLINGLCKIG WTERAFRLFL KLIKSSSYKP NVHTYTVMIG GYCNEGKLAR AEMLLGRMLE QGLTPNTNTY TTLISGHCKG GSFDRAFELM
401: NKMTREGSLP NIYTYNAVID GLLKKGKIEE AYKVLRRATT QGLELDKVTY TIFITEHCKQ GHITYALDLF NRMIENGCHP DIETYTTLIA TYCQQRQMEE
501: SQKAV

Best Arabidopsis Sequence Match ( AT4G19890.1 )
(BLAST)

001: MLSLLLPKSN RFLLRTFEIP NSLCSLFFFR LISSDHESSD LSLPSSPSSS PSQCLVKSVC SLVCTSYLRQ NHVVSSPHRV NLDFDANSLT HEQAITVVAS
101: LASESGSMVA LCFFYWAVGF EKFRHFMRLY LVTADSLLAN GNLQKAHEVM RCMLRNFSEI GRLNEAVGMV MDMQNQGLTP SSITMNCVLE IAVELGLIEY
201: AENVFDEMSV RGVVPDSSSY KLMVIGCFRD GKIQEADRWL TGMIQRGFIP DNATCTLILT ALCENGLVNR AIWYFRKMID LGFKPNLINF TSLIDGLCKK
301: GSIKQAFEML EEMVRNGWKP NVYTHTALID GLCKRGWTEK AFRLFLKLVR SDTYKPNVHT YTSMIGGYCK EDKLNRAEML FSRMKEQGLF PNVNTYTTLI
401: NGHCKAGSFG RAYELMNLMG DEGFMPNIYT YNAAIDSLCK KSRAPEAYEL LNKAFSCGLE ADGVTYTILI QEQCKQNDIN QALAFFCRMN KTGFEADMRL
501: NNILIAAFCR QKKMKESERL FQLVVSLGLI PTKETYTSMI SCYCKEGDID LALKYFHNMK RHGCVPDSFT YGSLISGLCK KSMVDEACKL YEAMIDRGLS
601: PPEVTRVTLA YEYCKRNDSA NAMILLEPLD KKLWIRTVRT LVRKLCSEKK VGVAALFFQK LLEKDSSADR VTLAAFTTAC SESGKNNLVT DLTERISRGV
701: G

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g19890 [Source:UniProtKB/Swiss-Prot;Acc:P0C8Q3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.