CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G028150.1	Barley	mitochondrion	71.62	62.97
Zm00001d048880_P001	Maize	mitochondrion	86.26	56.66
Os11t0607100-01	Rice	mitochondrion	74.32	49.18
TraesCS7B01G036200.1	Wheat	mitochondrion	73.87	49.1
TraesCS7D01G134400.2	Wheat	mitochondrion	73.42	48.66
TraesCS7A01G134800.1	Wheat	mitochondrion	73.42	48.51
Bra013432.1-P	Field mustard	cytosol	36.04	32.32
CDX78962	Canola	cytosol	36.04	32.32
CDY51888	Canola	cytosol, mitochondrion, plastid	35.81	32.19
GSMUA_Achr1P12220_001	Banana	mitochondrion	49.77	31.75
VIT_01s0011g01910.t01	Wine grape	mitochondrion	49.32	30.93
AT4G19890.1	Thale cress	plastid	46.85	29.67
KRH40170	Soybean	mitochondrion	45.95	29.44
Solyc02g068890.2.1	Tomato	mitochondrion	44.37	27.51
PGSC0003DMT400026741	Potato	mitochondrion	43.92	27.23
OQU87837	Sorghum	plastid	17.57	19.02
EES00885	Sorghum	cytosol, mitochondrion	22.75	17.63
EES10956	Sorghum	mitochondrion	24.32	17.59
EER99880	Sorghum	cytosol	18.69	17.36
OQU81794	Sorghum	mitochondrion, peroxisome	15.09	16.63
KXG22891	Sorghum	mitochondrion	21.85	16.58
EES07796	Sorghum	cytosol, endoplasmic reticulum, extracellular	22.3	16.5
OQU75844	Sorghum	cytosol	19.82	15.97
OQU90004	Sorghum	cytosol	15.99	14.95
KXG31660	Sorghum	mitochondrion	11.04	14.33
EES09272	Sorghum	plastid	23.42	14.31
EER96725	Sorghum	mitochondrion, plastid	19.59	13.66
OQU78719	Sorghum	cytosol	22.97	13.35
KXG39937	Sorghum	cytosol, plastid	23.2	12.97
KXG40115	Sorghum	cytosol	12.61	12.96

Protein Annotations

EnsemblPlants:OQU83816	EnsemblPlantsGene:SORBI_3005G182300	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF325
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	ProteinID:OQU83816	ProteinID:OQU83816.1	SEG:seg
TIGRFAMs:TIGR00756	UniParc:UPI000B8B9C97	UniProt:A0A1Z5RK99	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr5:+:66486985..66489015

Molecular Weight (calculated)

48946.8 Da

IEP (calculated)

10.098

GRAVY (calculated)

-0.078

Length

444 amino acids

Sequence
(BLAST)

001: MLPRHRHVRL LLLHPKPLPV STTATTAVSP PHPAPSSSAA AFPTAPDLDL DPSALSPDDA IASLTSVADN EGSAAALALF RRLSTRPDLR HLMRLYATAA
101: TLFVARGNLP MAHEAARAMV AAFAETNRLR EATDMLLELR SHGLPLVVET ANWVLRVGLR QRHHFAHARQ AFDGMGVRPD ARSFRALVLG CCQEGRFEEA
201: DALLAAMWRE GFSLDSATCT VVVRAFCRQG RFRDVPGLFG RMVEMGNPPN VVNYTAWVDG LCKRGYVKQA FHVLEEMVGK GLKPNVYTHT SLIDGLCKIG
301: WTERAFRLFL KLVKSSSYKP NVHTYTVMIG GYCKEGKLAR AEMLLGRMVE QGLAPNTNTY TTLIDGHCRG GSFDRAFELM NKMKLEGFLP NIYTYNAIIG
401: GFCKKGKIQQ AYKVLRMATS QGLCPDKISK RISGFKKKDV AVIA

Best Arabidopsis Sequence Match ( AT4G19890.1 )
(BLAST)

001: MLSLLLPKSN RFLLRTFEIP NSLCSLFFFR LISSDHESSD LSLPSSPSSS PSQCLVKSVC SLVCTSYLRQ NHVVSSPHRV NLDFDANSLT HEQAITVVAS
101: LASESGSMVA LCFFYWAVGF EKFRHFMRLY LVTADSLLAN GNLQKAHEVM RCMLRNFSEI GRLNEAVGMV MDMQNQGLTP SSITMNCVLE IAVELGLIEY
201: AENVFDEMSV RGVVPDSSSY KLMVIGCFRD GKIQEADRWL TGMIQRGFIP DNATCTLILT ALCENGLVNR AIWYFRKMID LGFKPNLINF TSLIDGLCKK
301: GSIKQAFEML EEMVRNGWKP NVYTHTALID GLCKRGWTEK AFRLFLKLVR SDTYKPNVHT YTSMIGGYCK EDKLNRAEML FSRMKEQGLF PNVNTYTTLI
401: NGHCKAGSFG RAYELMNLMG DEGFMPNIYT YNAAIDSLCK KSRAPEAYEL LNKAFSCGLE ADGVTYTILI QEQCKQNDIN QALAFFCRMN KTGFEADMRL
501: NNILIAAFCR QKKMKESERL FQLVVSLGLI PTKETYTSMI SCYCKEGDID LALKYFHNMK RHGCVPDSFT YGSLISGLCK KSMVDEACKL YEAMIDRGLS
601: PPEVTRVTLA YEYCKRNDSA NAMILLEPLD KKLWIRTVRT LVRKLCSEKK VGVAALFFQK LLEKDSSADR VTLAAFTTAC SESGKNNLVT DLTERISRGV
701: G

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g19890 [Source:UniProtKB/Swiss-Prot;Acc:P0C8Q3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.