CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
cytosol 1
nucleus 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51888	Canola	cytosol, mitochondrion, plastid	47.19	66.19
VIT_01s0011g01910.t01	Wine grape	mitochondrion	66.81	65.4
Bra013432.1-P	Field mustard	cytosol	46.61	65.25
CDX78962	Canola	cytosol	46.61	65.25
AT4G19890.1	Thale cress	plastid	60.75	60.06
Solyc02g068890.2.1	Tomato	mitochondrion	59.88	57.96
PGSC0003DMT400026741	Potato	mitochondrion	59.31	57.4
GSMUA_Achr1P12220_001	Banana	mitochondrion	54.11	53.88
TraesCS7B01G036200.1	Wheat	mitochondrion	48.2	50.0
TraesCS7D01G134400.2	Wheat	mitochondrion	47.91	49.55
TraesCS7A01G134800.1	Wheat	mitochondrion	47.91	49.4
Os11t0607100-01	Rice	mitochondrion	47.62	49.18
Zm00001d048880_P001	Maize	mitochondrion	47.33	48.52
HORVU7Hr1G028150.1	Barley	mitochondrion	35.35	48.51
OQU83816	Sorghum	mitochondrion	29.44	45.95
KRG99196	Soybean	cytosol	20.63	27.08
KRH33556	Soybean	cytosol	7.94	26.32
KRH34922	Soybean	cytosol	16.88	25.49
KRH29211	Soybean	cytosol	21.07	25.04
KRH51875	Soybean	cytosol	20.49	25.0
KRH50360	Soybean	cytosol, extracellular, plastid	19.91	24.82
KRH02112	Soybean	extracellular, mitochondrion	19.05	24.35
KRH17313	Soybean	mitochondrion	16.45	23.9
KRH45820	Soybean	cytosol, mitochondrion, plastid	24.96	23.32
KRH24548	Soybean	mitochondrion	20.63	22.95
KRH16451	Soybean	plastid	22.51	22.71
KRH18049	Soybean	plastid	22.51	22.71
KRH13392	Soybean	cytosol	19.19	22.66
KRG89236	Soybean	plastid	25.25	22.49
KRH72966	Soybean	mitochondrion	19.91	22.44
KRH51037	Soybean	endoplasmic reticulum, extracellular, plastid	14.86	22.2
KRH20741	Soybean	cytosol	18.33	21.64
KRH42458	Soybean	plastid	23.38	21.57
KRG90304	Soybean	cytosol	17.32	21.39
KRH54581	Soybean	mitochondrion	16.31	21.24
KRH14574	Soybean	plastid	19.19	20.78
KRH29553	Soybean	mitochondrion	13.13	20.78
KRH58559	Soybean	plastid	17.17	20.31
KRH44246	Soybean	cytosol	14.43	20.04
KRH49758	Soybean	plastid	20.35	20.03
KRH56553	Soybean	plastid	17.6	19.49
KRG93154	Soybean	plastid	20.49	14.87

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100798435	MapMan:35.1	EMBL:ACUP02006025	EnsemblPlantsGene:GLYMA_09G242500	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	UniProt:K7LFT8	ProteinID:KRH40168.1	ProteinID:KRH40169.1	EnsemblPlants:KRH40170
ProteinID:KRH40170	ProteinID:KRH40170.1	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF325	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI00023385EF	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:46459534..46463111

Molecular Weight (calculated)

78648.0 Da

IEP (calculated)

8.650

GRAVY (calculated)

-0.084

Length

693 amino acids

Sequence
(BLAST)

001: MLSSVILRTH ASPHRLTSLF ILRTKTLTHI TSPSCVQSTV TRVCSLVYDS YHHHYNHARF SPPTLHLDVD PNSLTHDQAV TIVASLASDA GSMVALSFFN
101: WAIASSKFRH FTRLYIACAA SLISNKNFEK AHEVMQCMVK SFAEIGRVKE AIEMVIEMHN QGLAPSTKTL NWVVKIVTEM GLVEYAENLF DEMCARGVQP
201: NCVSYRVMVV GYCKLGNVLE SDRWLGGMIE RGFVVDNATL SLIVREFCEK GFVTRALWYF RRFCEMGLRP NLINFTCMIE GLCKRGSVKQ AFEMLEEMVG
301: RGWKPNVYTH TALIDGLCKK GWTEKAFRLF LKLVRSENHK PNVLTYTAMI SGYCRDEKMN RAEMLLSRMK EQGLAPNTNT YTTLIDGHCK AGNFERAYEL
401: MNVMNEEGFS PNVCTYNAIV DGLCKKGRVQ EAYKVLKSGF RNGLDADKVT YTILISEHCK QAEIKQALVL FNKMVKSGIQ PDIHSYTTLI AVFCREKRMK
501: ESEMFFEEAV RFGLVPTNKT YTSMICGYCR EGNLRLALKF FHRMSDHGCA SDSITYGALI SGLCKQSKLD EARCLYDAMI EKGLTPCEVT RVTLAYEYCK
601: IDDGCSAMVV LERLEKKLWV RTVNTLVRKL CSERKVGMAA LFFHKLLDKD PNVNRVTIAA FMTACYESNK YDLVSDLSAR IYKENHLAIK VSK

Best Arabidopsis Sequence Match ( AT4G19890.1 )
(BLAST)

001: MLSLLLPKSN RFLLRTFEIP NSLCSLFFFR LISSDHESSD LSLPSSPSSS PSQCLVKSVC SLVCTSYLRQ NHVVSSPHRV NLDFDANSLT HEQAITVVAS
101: LASESGSMVA LCFFYWAVGF EKFRHFMRLY LVTADSLLAN GNLQKAHEVM RCMLRNFSEI GRLNEAVGMV MDMQNQGLTP SSITMNCVLE IAVELGLIEY
201: AENVFDEMSV RGVVPDSSSY KLMVIGCFRD GKIQEADRWL TGMIQRGFIP DNATCTLILT ALCENGLVNR AIWYFRKMID LGFKPNLINF TSLIDGLCKK
301: GSIKQAFEML EEMVRNGWKP NVYTHTALID GLCKRGWTEK AFRLFLKLVR SDTYKPNVHT YTSMIGGYCK EDKLNRAEML FSRMKEQGLF PNVNTYTTLI
401: NGHCKAGSFG RAYELMNLMG DEGFMPNIYT YNAAIDSLCK KSRAPEAYEL LNKAFSCGLE ADGVTYTILI QEQCKQNDIN QALAFFCRMN KTGFEADMRL
501: NNILIAAFCR QKKMKESERL FQLVVSLGLI PTKETYTSMI SCYCKEGDID LALKYFHNMK RHGCVPDSFT YGSLISGLCK KSMVDEACKL YEAMIDRGLS
601: PPEVTRVTLA YEYCKRNDSA NAMILLEPLD KKLWIRTVRT LVRKLCSEKK VGVAALFFQK LLEKDSSADR VTLAAFTTAC SESGKNNLVT DLTERISRGV
701: G

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g19890 [Source:UniProtKB/Swiss-Prot;Acc:P0C8Q3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.