CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90304	Soybean	cytosol	67.46	25.13
PGSC0003DMT400027103	Potato	cytosol	47.37	24.21
HORVU2Hr1G019920.1	Barley	cytosol	41.15	22.99
Solyc10g084080.1.1	Tomato	cytosol, extracellular	46.41	18.91
EER99880	Sorghum	cytosol	43.06	18.83
GSMUA_Achr11P...	Banana	cytosol	42.11	17.92
HORVU2Hr1G019880.2	Barley	cytosol	30.62	17.78
VIT_08s0040g01530.t01	Wine grape	cytosol	52.63	17.74
KRG93154	Soybean	plastid	75.12	16.44
TraesCS2A01G114800.1	Wheat	plastid	42.11	16.36
TraesCS2B01G133900.1	Wheat	plastid	42.11	16.36
Zm00001d007125_P001	Maize	endoplasmic reticulum, plastid	40.67	15.83
Zm00001d007129_P001	Maize	endoplasmic reticulum, plastid	40.19	15.64
Os07t0671200-00	Rice	extracellular	41.15	15.61
Zm00001d007127_P001	Maize	endoplasmic reticulum, plastid	38.28	15.36
TraesCS2D01G115600.1	Wheat	cytosol, plastid	41.63	14.87
Bra022891.1-P	Field mustard	plastid	43.06	14.66
CDX84733	Canola	plastid	43.06	14.66
CDX79463	Canola	plastid	43.06	14.59
AT2G32630.1	Thale cress	mitochondrion, plastid	41.63	13.94
KRH34922	Soybean	cytosol	26.32	11.98
PGSC0003DMT400027098	Potato	cytosol	34.93	11.81
KRH17313	Soybean	mitochondrion	25.36	11.11
PGSC0003DMT400027113	Potato	cytosol, plastid	51.2	10.59
KRG99196	Soybean	cytosol	26.32	10.42
KRH29211	Soybean	cytosol	26.79	9.61
KRH72966	Soybean	mitochondrion	27.27	9.27
KRH45820	Soybean	cytosol, mitochondrion, plastid	32.54	9.16
KRH51875	Soybean	cytosol	24.4	8.98
KRH50360	Soybean	cytosol, extracellular, plastid	23.45	8.81
KRH14574	Soybean	plastid	26.79	8.75
KRH24548	Soybean	mitochondrion	25.84	8.67
KRH54581	Soybean	mitochondrion	22.01	8.65
KRH02112	Soybean	extracellular, mitochondrion	22.01	8.49
KRH49758	Soybean	plastid	28.23	8.38
Solyc10g084090.1.1	Tomato	cytosol	51.67	8.08
KRH51037	Soybean	endoplasmic reticulum, extracellular, plastid	17.7	7.97
KRH40170	Soybean	mitochondrion	26.32	7.94
KRH16451	Soybean	plastid	25.84	7.86
KRH42458	Soybean	plastid	28.23	7.86
KRH58559	Soybean	plastid	22.01	7.85
KRH56553	Soybean	plastid	22.97	7.67
KRH18049	Soybean	plastid	24.88	7.57
KRG89236	Soybean	plastid	27.75	7.46
KRH44246	Soybean	cytosol	17.22	7.21
KRH13392	Soybean	cytosol	19.62	6.98
KRH20741	Soybean	cytosol	19.62	6.98
KRH29553	Soybean	mitochondrion	14.35	6.85

Protein Annotations

EMBL:ACUP02006525	EnsemblPlants:KRH33556	EnsemblPlantsGene:GLYMA_10G131000	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF418	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	ProteinID:KRH33556	ProteinID:KRH33556.1
TIGRFAMs:TIGR00756	UniParc:UPI0006ED6D86	UniProt:A0A0R0I3H3	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr10:+:35444181..35446092

Molecular Weight (calculated)

24045.3 Da

IEP (calculated)

8.263

GRAVY (calculated)

0.205

Length

209 amino acids

Sequence
(BLAST)

001: MCERNVEMDV FVYKSMISWT CKAGNVRMVS ALFDEMILRG IVPNTHTFGE LISRVCKVGQ MEVLKILLEE MQSKGVDLIV VIFNMMMDGY YIRGMVDKAF
101: RLQDTMEGKR LEVDVFIYNI LASWLCKLHE EANRVLTVMV KKGVAPNVMT CTTFIEIYCK EGNLAEVERF LKSMEKRGMV PNIVKYSTLI DTIAGMKKLS
201: ELMCYKLKL

Best Arabidopsis Sequence Match ( AT2G32630.1 )
(BLAST)

001: MNMSSSSRKL SRLFNIVTQN QKSPVLLSSD QEAARRITAC LVEKSTIGKL QSNPSLLFNL NSNVTRLVLS EPTLPTQSCI DFFKLLREFE SNLKPDLTAV
101: VTLSHRLYSN RRFNEMRSLL NSVVNDGFYK RPVEELGSAM VDCDISEEKF EFFEKFFDLV FRVYVDNGMF EEGLRVFDYM VKKGLSIDER SCIVFLVAAK
201: KRRRIDLCLE IFRRMVDSGV KITVYSLTIV VEGLCRRGEV EKSKKLIKEF SVKGIKPEAY TYNTIINAYV KQRDFSGVEG VLKVMKKDGV VYNKVTYTLL
301: MELSVKNGKM SDAEKLFDEM RERGIESDVH VYTSLISWNC RKGNMKRAFL LFDELTEKGL SPSSYTYGAL IDGVCKVGEM GAAEILMNEM QSKGVNITQV
401: VFNTLIDGYC RKGMVDEASM IYDVMEQKGF QADVFTCNTI ASCFNRLKRY DEAKQWLFRM MEGGVKLSTV SYTNLIDVYC KEGNVEEAKR LFVEMSSKGV
501: QPNAITYNVM IYAYCKQGKI KEARKLRANM EANGMDPDSY TYTSLIHGEC IADNVDEAMR LFSEMGLKGL DQNSVTYTVM ISGLSKAGKS DEAFGLYDEM
601: KRKGYTIDNK VYTALIGSMH SPET

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g32630 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8P6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.