CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G019920.1	Barley	cytosol	65.27	83.42
Zm00001d007125_P001	Maize	endoplasmic reticulum, plastid	88.91	79.14
Zm00001d007129_P001	Maize	endoplasmic reticulum, plastid	87.03	77.47
Zm00001d007127_P001	Maize	endoplasmic reticulum, plastid	84.1	77.16
TraesCS2A01G114800.1	Wheat	plastid	80.75	71.75
TraesCS2B01G133900.1	Wheat	plastid	79.92	71.0
Os07t0671200-00	Rice	extracellular	78.66	68.24
HORVU2Hr1G019880.2	Barley	cytosol	50.84	67.5
TraesCS2D01G115600.1	Wheat	cytosol, plastid	80.75	65.98
GSMUA_Achr11P...	Banana	cytosol	57.53	56.01
KRH33556	Soybean	cytosol	18.83	43.06
PGSC0003DMT400027103	Potato	cytosol	35.36	41.32
VIT_08s0040g01530.t01	Wine grape	cytosol	48.54	37.42
Solyc10g084080.1.1	Tomato	cytosol, extracellular	39.54	36.84
KRG90304	Soybean	cytosol	38.7	32.98
CDX84733	Canola	plastid	41.63	32.41
Bra022891.1-P	Field mustard	plastid	41.63	32.41
CDX79463	Canola	plastid	41.63	32.25
KXG31660	Sorghum	mitochondrion	22.59	31.58
AT2G32630.1	Thale cress	mitochondrion, plastid	39.75	30.45
OQU81794	Sorghum	mitochondrion, peroxisome	25.1	29.78
OQU87837	Sorghum	plastid	24.48	28.54
OQU75844	Sorghum	cytosol	29.08	25.23
KXG40115	Sorghum	cytosol	22.38	24.77
OQU90004	Sorghum	cytosol	23.43	23.58
KRG93154	Soybean	plastid	44.56	22.3
PGSC0003DMT400027113	Potato	cytosol, plastid	47.07	22.28
EES10956	Sorghum	mitochondrion	27.2	21.17
PGSC0003DMT400027098	Potato	cytosol	26.57	20.55
EES07796	Sorghum	cytosol, endoplasmic reticulum, extracellular	25.1	20.0
AT2G28050.1	Thale cress	cytosol, plastid	18.83	19.48
EES09272	Sorghum	plastid	29.5	19.39
PGSC0003DMT400040701	Potato	mitochondrion	22.18	19.27
EER96725	Sorghum	mitochondrion, plastid	25.52	19.15
OQU83816	Sorghum	mitochondrion	17.36	18.69
Solyc06g010270.1.1	Tomato	mitochondrion	17.36	17.93
OQU78719	Sorghum	cytosol	27.62	17.28
Solyc10g084090.1.1	Tomato	cytosol	46.44	16.6
KXG39937	Sorghum	cytosol, plastid	27.41	16.5
EES00885	Sorghum	cytosol, mitochondrion	19.04	15.88
KXG22891	Sorghum	mitochondrion	19.04	15.56

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:C5X4W4	EnsemblPlants:EER99880	ProteinID:EER99880	ProteinID:EER99880.3
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	InterPro:IPR002885
InterPro:IPR011990	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF418	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3002G412300	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0009DC834A	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:76029872..76031308

Molecular Weight (calculated)

52242.2 Da

IEP (calculated)

6.666

GRAVY (calculated)

-0.092

Length

478 amino acids

Sequence
(BLAST)

001: MLFRAYADAG AGDRAAEALD AAVARLGRLD PRSLTSSLLS LRRAGQLADA AAILTRALGS CPGSVSPLAA SVVVDGFCKS GRVDDARALL DEMPRHGVRL
101: NALCYNSLLD CYVRRKDDAR VQELLEIMEN GGIEATVGTY TILVDSLSTA GDISKVEAVV DEMKAKNVAG DVYLYTAVIN AYCRAGNVRR ASEVFDECVG
201: NGIEPNERTY GVLINGFCKI GQMEAAEMLL ADMQGRGVGH NQIIFNTMID GYCRQGMVDN ALKVKAAMEK MGIELDVYTY NTLACGLCRV NRMAEAKTLL
301: HIMIEKGVPP NYVTYTTLIS IHCKEGDMVE ARRLFREMAG KGAMPSVVTY NVMMDGYIKK GSIREAERFR KEMEKKGLVP DVYTYASLVH GHCVNGKVDV
401: ALKLFEEMKH RGTEPNVVAY TALISGLAKE GRSEEAFQLY DDMLKAGLTP DDSLYSALVG SLHTDNRKDI HHKQIKVS

Best Arabidopsis Sequence Match ( AT2G32630.1 )
(BLAST)

001: MNMSSSSRKL SRLFNIVTQN QKSPVLLSSD QEAARRITAC LVEKSTIGKL QSNPSLLFNL NSNVTRLVLS EPTLPTQSCI DFFKLLREFE SNLKPDLTAV
101: VTLSHRLYSN RRFNEMRSLL NSVVNDGFYK RPVEELGSAM VDCDISEEKF EFFEKFFDLV FRVYVDNGMF EEGLRVFDYM VKKGLSIDER SCIVFLVAAK
201: KRRRIDLCLE IFRRMVDSGV KITVYSLTIV VEGLCRRGEV EKSKKLIKEF SVKGIKPEAY TYNTIINAYV KQRDFSGVEG VLKVMKKDGV VYNKVTYTLL
301: MELSVKNGKM SDAEKLFDEM RERGIESDVH VYTSLISWNC RKGNMKRAFL LFDELTEKGL SPSSYTYGAL IDGVCKVGEM GAAEILMNEM QSKGVNITQV
401: VFNTLIDGYC RKGMVDEASM IYDVMEQKGF QADVFTCNTI ASCFNRLKRY DEAKQWLFRM MEGGVKLSTV SYTNLIDVYC KEGNVEEAKR LFVEMSSKGV
501: QPNAITYNVM IYAYCKQGKI KEARKLRANM EANGMDPDSY TYTSLIHGEC IADNVDEAMR LFSEMGLKGL DQNSVTYTVM ISGLSKAGKS DEAFGLYDEM
601: KRKGYTIDNK VYTALIGSMH SPET

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g32630 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8P6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.