Factsheet for TraesCS2B01G133900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G114800.1	Wheat	plastid	97.03	97.03
HORVU2Hr1G019920.1	Barley	cytosol	65.61	94.39
TraesCS2D01G115600.1	Wheat	cytosol, plastid	97.4	89.57
EER99880	Sorghum	cytosol	71.0	79.92
Zm00001d007125_P001	Maize	endoplasmic reticulum, plastid	77.51	77.65
Os07t0671200-00	Rice	extracellular	78.81	76.95
HORVU2Hr1G019880.2	Barley	cytosol	50.93	76.11
Zm00001d007127_P001	Maize	endoplasmic reticulum, plastid	73.42	75.82
Zm00001d007129_P001	Maize	endoplasmic reticulum, plastid	75.65	75.79
GSMUA_Achr11P...	Banana	cytosol	49.44	54.18
KRH33556	Soybean	cytosol	16.36	42.11
VIT_08s0040g01530.t01	Wine grape	cytosol	45.17	39.19
PGSC0003DMT400027103	Potato	cytosol	29.0	38.14
Solyc10g084080.1.1	Tomato	cytosol, extracellular	34.01	35.67
KRG90304	Soybean	cytosol	36.8	35.29
CDX79463	Canola	plastid	39.96	34.85
Bra022891.1-P	Field mustard	plastid	39.22	34.36
CDX84733	Canola	plastid	39.03	34.2
AT2G32630.1	Thale cress	mitochondrion, plastid	39.59	34.13
TraesCS2B01G355200.1	Wheat	plastid	24.35	25.0
TraesCS1B01G176600.2	Wheat	mitochondrion	27.14	24.87
KRG93154	Soybean	plastid	42.38	23.87
TraesCS4B01G280500.1	Wheat	plastid	25.09	23.0
TraesCS7B01G006900.1	Wheat	plastid	29.0	22.45
PGSC0003DMT400027113	Potato	cytosol, plastid	41.64	22.18
PGSC0003DMT400027098	Potato	cytosol	25.46	22.17
AT2G28050.1	Thale cress	cytosol, plastid	18.77	21.86
TraesCS2B01G345200.1	Wheat	mitochondrion	24.54	21.67
TraesCS7B01G036200.1	Wheat	mitochondrion	26.21	21.11
TraesCS7B01G267600.1	Wheat	mitochondrion	24.35	20.79
PGSC0003DMT400040701	Potato	mitochondrion	20.82	20.36
TraesCS2B01G343000.1	Wheat	cytosol, plastid	18.96	20.32
TraesCS6B01G408200.1	Wheat	plastid	22.12	19.93
TraesCS5B01G228400.1	Wheat	plastid	23.79	19.69
TraesCS5B01G127400.1	Wheat	plastid	24.54	19.64
Solyc06g010270.1.1	Tomato	mitochondrion	16.36	19.01
TraesCS2B01G273600.1	Wheat	plastid	25.09	18.1
TraesCS3B01G225400.1	Wheat	cytosol, mitochondrion	19.14	17.98
Solyc10g084090.1.1	Tomato	cytosol	42.94	17.28

Protein Annotations

EnsemblPlants:TraesCS2B01G133900.1	EnsemblPlantsGene:TraesCS2B01G133900	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF418
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	SEG:seg	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr2B:-:100079113..100080729

Molecular Weight (calculated)

58951.6 Da

IEP (calculated)

7.918

GRAVY (calculated)

-0.062

Length

538 amino acids

Sequence
(BLAST)

001: MASVPETRPA PLAAFASLLA ARRFGAAKSM LPSLLTPTLL AVPFADLAAG SLPRAAPRHA VAAFHDMLFR AYADAGAPER AAEALDLTVS RLGSLDPRSL
101: TSSLLSLRRT GHLLPAAELL RKALAFSPGS ITPLSASVVV DGFCKAGRMD DARRLLDEMP RHGVKLNACC YNSLLDSYTR QKNDGRVAEV LKEMESGGVE
201: LTVGTYTILV DGLSMAGDIS KVESVFDEMK RKNVAGDVYF YSVVINAYCR AGNVRRASEV FDECVGNGIE PNDRTYGALI NGFCKIGQIE AAEMLLTDMQ
301: LRGVRLNQIV FNTMIDGYCR HGMVDKALEI KAVMERMGIQ LDVYTYNTLA CGLCRVNRME EAKKLLHIMT ENGVKSNYVS YTTLISIHSK EGDMVEARRL
401: FRDMEGKGSR PSVVTYNVMI DGYIKNGSIR EAERFKKEME KKGLVPDVYT YAAIVHGHCV NGKVDVALRL FEEMKLRGAK PNVVAYTALI SGLATEGRSE
501: EAFQLYDNML AAGLTPDDTL YSMLVGSLHT DKRKHEIP

Best Arabidopsis Sequence Match ( AT2G32630.1 )
(BLAST)

001: MNMSSSSRKL SRLFNIVTQN QKSPVLLSSD QEAARRITAC LVEKSTIGKL QSNPSLLFNL NSNVTRLVLS EPTLPTQSCI DFFKLLREFE SNLKPDLTAV
101: VTLSHRLYSN RRFNEMRSLL NSVVNDGFYK RPVEELGSAM VDCDISEEKF EFFEKFFDLV FRVYVDNGMF EEGLRVFDYM VKKGLSIDER SCIVFLVAAK
201: KRRRIDLCLE IFRRMVDSGV KITVYSLTIV VEGLCRRGEV EKSKKLIKEF SVKGIKPEAY TYNTIINAYV KQRDFSGVEG VLKVMKKDGV VYNKVTYTLL
301: MELSVKNGKM SDAEKLFDEM RERGIESDVH VYTSLISWNC RKGNMKRAFL LFDELTEKGL SPSSYTYGAL IDGVCKVGEM GAAEILMNEM QSKGVNITQV
401: VFNTLIDGYC RKGMVDEASM IYDVMEQKGF QADVFTCNTI ASCFNRLKRY DEAKQWLFRM MEGGVKLSTV SYTNLIDVYC KEGNVEEAKR LFVEMSSKGV
501: QPNAITYNVM IYAYCKQGKI KEARKLRANM EANGMDPDSY TYTSLIHGEC IADNVDEAMR LFSEMGLKGL DQNSVTYTVM ISGLSKAGKS DEAFGLYDEM
601: KRKGYTIDNK VYTALIGSMH SPET

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g32630 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8P6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.