Factsheet for PGSC0003DMT400027113

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g084090.1.1	Tomato	cytosol	91.78	69.33
PGSC0003DMT400027098	Potato	cytosol	36.63	59.87
PGSC0003DMT400027103	Potato	cytosol	23.96	59.17
KRH33556	Soybean	cytosol	10.59	51.2
VIT_08s0040g01530.t01	Wine grape	cytosol	31.39	51.13
HORVU2Hr1G019920.1	Barley	cytosol	18.51	50.0
GSMUA_Achr11P...	Banana	cytosol	23.37	48.07
EER99880	Sorghum	cytosol	22.28	47.07
CDX84733	Canola	plastid	26.14	43.0
Bra022891.1-P	Field mustard	plastid	26.04	42.83
HORVU2Hr1G019880.2	Barley	cytosol	15.15	42.5
Os07t0671200-00	Rice	extracellular	23.17	42.47
CDX79463	Canola	plastid	25.94	42.46
Zm00001d007125_P001	Maize	endoplasmic reticulum, plastid	22.38	42.09
TraesCS2A01G114800.1	Wheat	plastid	22.38	42.01
AT2G32630.1	Thale cress	mitochondrion, plastid	25.94	41.99
TraesCS2B01G133900.1	Wheat	plastid	22.18	41.64
KRG90304	Soybean	cytosol	23.07	41.53
Zm00001d007129_P001	Maize	endoplasmic reticulum, plastid	21.98	41.34
Zm00001d007127_P001	Maize	endoplasmic reticulum, plastid	21.29	41.27
TraesCS2D01G115600.1	Wheat	cytosol, plastid	22.28	38.46
KRG93154	Soybean	plastid	26.24	27.75
PGSC0003DMT400034430	Potato	cytosol	13.07	27.5
PGSC0003DMT400040701	Potato	mitochondrion	14.26	26.18
PGSC0003DMT400024895	Potato	cytosol	11.49	25.33
PGSC0003DMT400007278	Potato	mitochondrion	14.65	24.46
PGSC0003DMT400066731	Potato	mitochondrion, plastid	14.75	24.11
PGSC0003DMT400058577	Potato	plastid	13.07	23.53
PGSC0003DMT400015807	Potato	endoplasmic reticulum, extracellular	13.47	22.26
PGSC0003DMT400015805	Potato	endoplasmic reticulum, extracellular	13.47	22.26
PGSC0003DMT400078379	Potato	cytosol	14.75	21.53
PGSC0003DMT400003372	Potato	mitochondrion	15.45	21.37
PGSC0003DMT400026741	Potato	mitochondrion	14.36	20.25
PGSC0003DMT400043863	Potato	endoplasmic reticulum, golgi	15.15	20.11
PGSC0003DMT400043860	Potato	endoplasmic reticulum, golgi	15.15	20.11
PGSC0003DMT400058276	Potato	mitochondrion	14.95	20.08
PGSC0003DMT400066369	Potato	mitochondrion	15.15	19.95
PGSC0003DMT400015722	Potato	cytosol	10.1	19.25
PGSC0003DMT400066275	Potato	cytosol	5.74	17.85
PGSC0003DMT400023499	Potato	plastid	10.99	17.65

Protein Annotations

EnsemblPlants:PGSC0003DMT400027113	EnsemblPlantsGene:PGSC0003DMG400010458	EntrezGene:102578360	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF418	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PGSC:PGSC0003DMG400010458	SEG:seg
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	UniParc:UPI000296EBFB	UniProt:M1AP71	MapMan:35.1	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400010458]

Coordinates

chr10:-:54996284..55002480

Molecular Weight (calculated)

113572.0 Da

IEP (calculated)

6.917

GRAVY (calculated)

-0.130

Length

1010 amino acids

Sequence
(BLAST)

0001: MSTQKIYQPV KQRFPKRPIK EIAKLIALFP PSLSSCSNFF NFKQSPNLET HLAVVLDLLK SKEFAEAENI LNAVVVTDVY SMTVVVDGLC KMGEVCEARK
0101: LMDEMASKRV KPSDYTYNIL LQEYIKIHDF VAVKEILREM EKDGFDLNLT SYTLLIKGYS TFGDLVEVER LFKEIEKKGI EPNVHLCTSM ISGYSKLGNV
0201: MKAFSTFVKM VERGLTPDGH TYGALINSFC KAGLMQGAEV LLNEMQGKGI SIDRVIFNTM MDGYCKQGNV DEALRLQTIM EGERHQPNAN AYNIIVMGMR
0301: KLELYDEAKR LLLSMVDRGV APDTISYTTL IDIYCKQGNF VEAKRALIEM ETKEIKPNTT TYTTLVDGYC KLGKIVDAKR ILRVMETEGV KPNTTTNSVC
0401: AMIDVTYTAL IHGYCMVRNL AKAEKVLIEM EPKGVKLNMV TYPALIDGCC KVGNIAKAIK ILIEMENKGF KPNAITCNAL KMVIVRKNYK RAKIQLTPSS
0501: PVTEETKPRR ELDSVTGKTC QQCQPSEIAS FLGENHVDHK VMGKMFDMLF RVYVDSMRFK EALEVFEYMK NGGFEIDDRS CMVYLLAMKR RKQYDSLVEF
0601: FEMMVESDVR ITVYSMTMVI DGLCKVGEVS KARKLMDEMV SKGVKPNVYT YNTLLDACMK MPDFVALKEI LLAMEKEGLD LDVTGYTLLI DGYCNIGNLK
0701: EVERLFREIE GKGIEPDVHL YTSMISGCSK LGNVKKAFSV FDEMVERGLI PNAHTYGALI NCLCKAGQMQ AAEVLLNEMQ SKGIDIGPVI FNTMMDGYCK
0801: QGNIDEAWRL QKIMEGKGYE SDVYVYNIIA TGLCKLDRCE EAKTWLFSMV DRGVAPNEVA HTTLISIYSK EGNFVEAKRT LREMEAKGVK PNTATYNTLI
0901: DGYCKKGMMK EAYKLKNVME CKGLKPDLYT YTSLVHGECI SGKVDDALKL FNEMPREGLV PNVVTYTAMI SGLSKEGRSD EAFRLYDEMI EAGLTPDASA
1001: YSALVGSLHG

Best Arabidopsis Sequence Match ( AT2G32630.1 )
(BLAST)

001: MNMSSSSRKL SRLFNIVTQN QKSPVLLSSD QEAARRITAC LVEKSTIGKL QSNPSLLFNL NSNVTRLVLS EPTLPTQSCI DFFKLLREFE SNLKPDLTAV
101: VTLSHRLYSN RRFNEMRSLL NSVVNDGFYK RPVEELGSAM VDCDISEEKF EFFEKFFDLV FRVYVDNGMF EEGLRVFDYM VKKGLSIDER SCIVFLVAAK
201: KRRRIDLCLE IFRRMVDSGV KITVYSLTIV VEGLCRRGEV EKSKKLIKEF SVKGIKPEAY TYNTIINAYV KQRDFSGVEG VLKVMKKDGV VYNKVTYTLL
301: MELSVKNGKM SDAEKLFDEM RERGIESDVH VYTSLISWNC RKGNMKRAFL LFDELTEKGL SPSSYTYGAL IDGVCKVGEM GAAEILMNEM QSKGVNITQV
401: VFNTLIDGYC RKGMVDEASM IYDVMEQKGF QADVFTCNTI ASCFNRLKRY DEAKQWLFRM MEGGVKLSTV SYTNLIDVYC KEGNVEEAKR LFVEMSSKGV
501: QPNAITYNVM IYAYCKQGKI KEARKLRANM EANGMDPDSY TYTSLIHGEC IADNVDEAMR LFSEMGLKGL DQNSVTYTVM ISGLSKAGKS DEAFGLYDEM
601: KRKGYTIDNK VYTALIGSMH SPET

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g32630 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8P6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.