Factsheet for PGSC0003DMT400023499

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g007390.2.1	Tomato	plastid	93.32	92.44
VIT_17s0000g03060.t01	Wine grape	plastid	55.33	52.73
KRH56553	Soybean	plastid	48.33	48.56
CDY42586	Canola	plastid	47.85	48.55
Bra025578.1-P	Field mustard	plastid	47.54	47.99
CDY50117	Canola	plastid	47.54	47.99
AT5G40400.2	Thale cress	cytosol	47.54	43.91
PGSC0003DMT400034430	Potato	cytosol	20.03	26.25
PGSC0003DMT400015722	Potato	cytosol	20.83	24.72
PGSC0003DMT400007278	Potato	mitochondrion	23.37	24.3
PGSC0003DMT400066731	Potato	mitochondrion, plastid	23.21	23.62
PGSC0003DMT400058577	Potato	plastid	18.6	20.86
PGSC0003DMT400003372	Potato	mitochondrion	23.37	20.14
PGSC0003DMT400027103	Potato	cytosol	13.04	20.05
PGSC0003DMT400066369	Potato	mitochondrion	23.53	19.3
PGSC0003DMT400043860	Potato	endoplasmic reticulum, golgi	23.21	19.19
PGSC0003DMT400043863	Potato	endoplasmic reticulum, golgi	23.21	19.19
PGSC0003DMT400078379	Potato	cytosol	20.99	19.08
PGSC0003DMT400024895	Potato	cytosol	13.83	19.0
PGSC0003DMT400015807	Potato	endoplasmic reticulum, extracellular	18.44	18.99
PGSC0003DMT400015805	Potato	endoplasmic reticulum, extracellular	18.44	18.99
PGSC0003DMT400026741	Potato	mitochondrion	20.83	18.3
PGSC0003DMT400058276	Potato	mitochondrion	21.78	18.22
PGSC0003DMT400040701	Potato	mitochondrion	15.58	17.82
PGSC0003DMT400027098	Potato	cytosol	13.04	13.27
PGSC0003DMT400066275	Potato	cytosol	5.72	11.08
PGSC0003DMT400027113	Potato	cytosol, plastid	17.65	10.99
Os03t0201200-01	Rice	nucleus	2.86	7.73

Protein Annotations

EnsemblPlants:PGSC0003DMT400023499	EnsemblPlantsGene:PGSC0003DMG400009102	EntrezGene:102587608	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF657	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PGSC:PGSC0003DMG400009102	RefSeq:XP_015165632.1
TIGRFAMs:TIGR00756	UniParc:UPI0002962D7B	UniProt:M1AIH1	MapMan:35.1	:	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400009102]

Coordinates

chr3:+:48881525..48886166

Molecular Weight (calculated)

71434.5 Da

IEP (calculated)

7.776

GRAVY (calculated)

-0.132

Length

629 amino acids

Sequence
(BLAST)

001: MNLTQKSIKS TCSNGELLIS FKNLHSRLNF SSSNCVQILT DYSGSARPFS NPLHNFLPKT QNPQNTVSLI CSALKNRNND HLSLLQKTIQ DNGLISYFSD
101: SEISRVLLRC QSDSCSALSF FNWVKNDLGV EPNTRNCCLV IHILTWTRNF SQAMKFLSEL VNLKRDGMES VDVFESLLSS SGLCNWDPVV FDMLIKAFLK
201: VNMVKDGFRA FRKTVKHGMY PSVITVNCLL TGLSKLNYSK KCWEVYAEME RIGVHPNSCT FNILTHVLCK DEDVNKVNEF LEKMEEEGFQ PDIVTYNTLV
301: SSYCRKGRMK DAVHLYQIMY IRDVSPDLFT YTSLINGFCK KGNVKDAHQL FIRMADRGLK PDVILYNTLI SGYCKEGMMQ EARFLLHDMI GEGMHPDKFT
401: CSVLVQGYQK QDNLVSAVNL VTELQRFRFV VSHDIYNYLI AALCIENRPF AAKALIDRVS GDRYEPSNMV YGELIESFCR CNFPDEASCL KAEMVSKDLK
501: PDIGTYRAII KCLCKLGRSM DANSLMREMT DCDVPPDIEV CRALINGHCG ENNFCEAQSL LSFFAQEFKI FDTVCYNTIV RLLSGEGDIA KLMKFQDKMR
601: KVGFAPNQLT CKYVIDGLQK AVGVHKINS

Best Arabidopsis Sequence Match ( AT5G40400.2 )
(BLAST)

001: MCSKTRRSNP VSVRGDANHL SFLRTQSIVP YVNIYILHLN GILNRCGTNT YSFSSKPLPS TASVSLFSLR FMKNLVSNLR FFSSYSSSIV PRCSNIPKPI
101: LNPLYNLLPQ SQNPSKIVDV ICSTLNHSDY SVLLPNLRDE VKSLIPHLGY PEISRVLLRF QSDASRAITF FKWVKFDLGK RPNVGNYCLL LHILVSSKKF
201: PLAMQFLCEL IELTSKKEEV DVFRVLVSAT DECNWDPVVF DMLVKGYLKL GLVEEGFRVF REVLDSGFSV SVVTCNHLLN GLLKLDLMED CWQVYSVMCR
301: VGIHPNTYTF NILTNVFCND SNFREVDDFL EKMEEEGFEP DLVTYNTLVS SYCRRGRLKE AFYLYKIMYR RRVVPDLVTY TSLIKGLCKD GRVREAHQTF
401: HRMVDRGIKP DCMSYNTLIY AYCKEGMMQQ SKKLLHEMLG NSVVPDRFTC KVIVEGFVRE GRLLSAVNFV VELRRLKVDI PFEVCDFLIV SLCQEGKPFA
501: AKHLLDRIIE EEGHEAKPET YNNLIESLSR CDAIEEALVL KGKLKNQNQV LDAKTYRALI GCLCRIGRNR EAESLMAEMF DSEVKPDSFI CGALVYGYCK
601: ELDFDKAERL LSLFAMEFRI FDPESYNSLV KAVCETGCGY KKALELQERM QRLGFVPNRL TCKYLIQVLE QPSLPNHLPE N

Arabidopsis Description

Pentatricopeptide repeat (PPR) superfamily protein [Source:TAIR;Acc:AT5G40400]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.