Factsheet for PGSC0003DMT400034430

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 2
nucleus 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g011410.1.1	Tomato	cytosol	96.88	96.88
VIT_14s0006g00170.t01	Wine grape	mitochondrion	59.58	48.31
KRH17313	Soybean	mitochondrion	47.92	48.22
Os04t0463300-01	Rice	cytosol	6.88	47.14
KRH72966	Soybean	mitochondrion	57.08	44.55
Zm00001d003397_P001	Maize	endoplasmic reticulum, extracellular	44.38	44.01
Zm00001d003396_P001	Maize	endoplasmic reticulum, extracellular	44.38	44.01
CDX93490	Canola	mitochondrion	54.17	43.33
Bra020001.1-P	Field mustard	mitochondrion	53.96	43.17
AT1G09680.1	Thale cress	mitochondrion	53.54	42.34
CDX94959	Canola	mitochondrion	53.12	41.94
GSMUA_Achr6P30640_001	Banana	mitochondrion, plastid	52.29	41.49
TraesCS2B01G345200.1	Wheat	mitochondrion	45.83	36.12
TraesCS2A01G336700.1	Wheat	cytosol	45.42	35.8
TraesCS2D01G326200.1	Wheat	mitochondrion	45.42	35.8
HORVU2Hr1G080860.1	Barley	plastid	45.0	34.18
EES10956	Sorghum	mitochondrion	43.12	33.71
PGSC0003DMT400027103	Potato	cytosol	22.71	26.65
PGSC0003DMT400007278	Potato	mitochondrion	29.58	23.47
PGSC0003DMT400066731	Potato	mitochondrion, plastid	29.17	22.65
PGSC0003DMT400024895	Potato	cytosol	21.46	22.49
PGSC0003DMT400058577	Potato	plastid	26.04	22.28
PGSC0003DMT400015722	Potato	cytosol	23.96	21.7
PGSC0003DMT400078379	Potato	cytosol	30.21	20.95
PGSC0003DMT400023499	Potato	plastid	26.25	20.03
PGSC0003DMT400058276	Potato	mitochondrion	31.04	19.81
PGSC0003DMT400066369	Potato	mitochondrion	31.46	19.69
PGSC0003DMT400015807	Potato	endoplasmic reticulum, extracellular	24.17	18.99
PGSC0003DMT400015805	Potato	endoplasmic reticulum, extracellular	24.17	18.99
PGSC0003DMT400003372	Potato	mitochondrion	28.33	18.63
PGSC0003DMT400043863	Potato	endoplasmic reticulum, golgi	28.12	17.74
PGSC0003DMT400043860	Potato	endoplasmic reticulum, golgi	28.12	17.74
PGSC0003DMT400026741	Potato	mitochondrion	26.04	17.46
PGSC0003DMT400027098	Potato	cytosol	20.83	16.18
PGSC0003DMT400040701	Potato	mitochondrion	18.12	15.82
PGSC0003DMT400066275	Potato	cytosol	9.58	14.15
PGSC0003DMT400027113	Potato	cytosol, plastid	27.5	13.07

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	InterPro:IPR002885	InterPro:IPR011990
UniProt:M1B0N7	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	EnsemblPlantsGene:PGSC0003DMG400013237	PGSC:PGSC0003DMG400013237
EnsemblPlants:PGSC0003DMT400034430	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF923	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000294CABA	:	:	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400013237]

Coordinates

chr11:-:1257777..1262017

Molecular Weight (calculated)

54308.4 Da

IEP (calculated)

8.185

GRAVY (calculated)

-0.140

Length

480 amino acids

Sequence
(BLAST)

001: MYPQGHSFIN TIVSRKGKDS AFTVFQAFLK AKGTNFTSFV NVLNRLIDVY LDLGFVSDAI QCFRLIQKHK IKFPFQGCTK VLEYLMKLNS PMVAFDFYKE
101: LLEYGHPANV YFFNVLMSKF CKEGKMMEAR SVFTEMWKRN LRPSVVSFNT LINGYCRLGD MDAGYRLKKE MEERGISPDV YTYSALINGL CKKFWMSDAN
201: ELFNEMCVKG LVPNVVIFTT LINGHCKDGS VALAMDTYQQ MLKQGVEPDL ITYNTLVNGL CKSGDLEEAR KLIHVMVEKG LKADKITYTT VIDGCCKEGD
301: LDGAFEIKKV MVDNKIELDD VAYTALITGL CRQGRTVDAE RILTEMLNVG LKPDDPIYTV VIDGFCKKGD IKMGFKLLRQ MQSNGHAPNV ITYNVLLNGL
401: CRQGQMRNAE MLLQAMLNLG LNPDDITYNI LLEGHCKHGN PDEYDKLRGE MGLVHDYATY TSLVGSLSRS SKRQPKKSFM

Best Arabidopsis Sequence Match ( AT1G09680.1 )
(BLAST)

001: MFRIEILRCT LSQSHPQRFS RASFLLSTWY SQESVSAADN DDDPVLVKLS VAIRDSYKDP PLEFSSFTDC PSIRKVLPSL SVHHVVDLIN HNPLSLPQRS
101: IFAFFKFISS QPGFRFTVET YFVLARFLAV HEMFTEAQSL IELVVSRKGK NSASSVFISL VEMRVTPMCG FLVDALMITY TDLGFIPDAI QCFRLSRKHR
201: FDVPIRGCGN LLDRMMKLNP TGTIWGFYME ILDAGFPLNV YVFNILMNKF CKEGNISDAQ KVFDEITKRS LQPTVVSFNT LINGYCKVGN LDEGFRLKHQ
301: MEKSRTRPDV FTYSALINAL CKENKMDGAH GLFDEMCKRG LIPNDVIFTT LIHGHSRNGE IDLMKESYQK MLSKGLQPDI VLYNTLVNGF CKNGDLVAAR
401: NIVDGMIRRG LRPDKITYTT LIDGFCRGGD VETALEIRKE MDQNGIELDR VGFSALVCGM CKEGRVIDAE RALREMLRAG IKPDDVTYTM MMDAFCKKGD
501: AQTGFKLLKE MQSDGHVPSV VTYNVLLNGL CKLGQMKNAD MLLDAMLNIG VVPDDITYNT LLEGHHRHAN SSKRYIQKPE IGIVADLASY KSIVNELDRA
601: SKDHRNR

Arabidopsis Description

Putative pentatricopeptide repeat-containing protein At1g09680 [Source:UniProtKB/Swiss-Prot;Acc:O04491]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.