Factsheet for Bra020001.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93490	Canola	mitochondrion	98.83	98.83
AT1G09680.1	Thale cress	mitochondrion	84.33	83.36
VIT_14s0006g00170.t01	Wine grape	mitochondrion	57.33	58.11
PGSC0003DMT400034430	Potato	cytosol	43.17	53.96
Solyc11g011410.1.1	Tomato	cytosol	42.5	53.12
KRH17313	Soybean	mitochondrion	41.33	51.99
KRH72966	Soybean	mitochondrion	52.5	51.22
GSMUA_Achr6P30640_001	Banana	mitochondrion, plastid	49.33	48.93
Os04t0463300-01	Rice	cytosol	5.5	47.14
Zm00001d003397_P001	Maize	endoplasmic reticulum, extracellular	35.5	44.01
Zm00001d003396_P001	Maize	endoplasmic reticulum, extracellular	35.5	44.01
TraesCS2B01G345200.1	Wheat	mitochondrion	43.0	42.36
TraesCS2A01G336700.1	Wheat	cytosol	42.83	42.2
TraesCS2D01G326200.1	Wheat	mitochondrion	42.17	41.54
HORVU2Hr1G080860.1	Barley	plastid	42.33	40.19
EES10956	Sorghum	mitochondrion	41.0	40.07
Bra028204.1-P	Field mustard	cytosol	24.17	24.45
Bra015447.1-P	Field mustard	cytosol	17.17	23.62
Bra019985.1-P	Field mustard	cytosol	23.83	23.37
Bra040883.1-P	Field mustard	endoplasmic reticulum	22.33	23.3
Bra015229.1-P	Field mustard	mitochondrion	23.83	22.59
Bra022891.1-P	Field mustard	plastid	22.5	21.99
Bra005695.1-P	Field mustard	mitochondrion	26.33	21.32
Bra025651.1-P	Field mustard	mitochondrion	26.17	21.07
Bra017434.1-P	Field mustard	cytosol, plastid	19.5	21.01
Bra024831.1-P	Field mustard	mitochondrion	25.33	20.77
Bra025578.1-P	Field mustard	plastid	21.17	20.39
Bra038853.1-P	Field mustard	mitochondrion	23.0	19.83
Bra035931.1-P	Field mustard	mitochondrion	19.83	18.39
Bra013432.1-P	Field mustard	cytosol	15.0	18.18
Bra024554.1-P	Field mustard	cytosol	10.17	18.05
Bra024552.1-P	Field mustard	cytosol	6.0	14.29
Bra002000.1-P	Field mustard	cytosol	6.83	13.53
Bra026410.1-P	Field mustard	mitochondrion	19.17	8.72

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlantsGene:Bra020001	EnsemblPlants:Bra020001.1	EnsemblPlants:Bra020001.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	InterPro:IPR002885	InterPro:IPR011990	UniProt:M4DU08	PFAM:PF01535	PFAM:PF12854
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF923	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000253E91A	SEG:seg	:	:	:

Description

AT1G09680 (E=1e-270) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA06:-:3318047..3319849

Molecular Weight (calculated)

67491.0 Da

IEP (calculated)

9.268

GRAVY (calculated)

-0.170

Length

600 amino acids

Sequence
(BLAST)

001: MFRIKILRNT VSRSHPQAFS RTSSLLSTWY SPESISPPPQ ADDDDDPVLV KLSIAIRDSN SSFTSSPSLR NLLPSLTARH VLDLINRNPL SLPHHSIFAF
101: FKFISSQPGF RFTVDSYFAM ARFLAVHKMF DEAQSLIALV VSRKGKNSAS SVFVSALETR GSDFLVDALM MAYTNAGFVP DAIQCFRLSR KHKFTVPIRG
201: CGSLLHRMMK VNPTETVWGF YMEILDAGYP SNVYVFNILM NKFCKEGKMC DAQKVFDEIT KRSLRPTVVS FNTLINGYCK AGNLDKGFRL KERMERGRTR
301: ADVFTYSALI NALCKENKMD GAHGLFDEMC ERGLIPNDVV FTTLIHGHSR NGRIDLMKES YQKMLSRGLQ PDIVLYNTLV NGFCKNGDLV AARNVVDGMI
401: HRGLRPDKVT YTTLIDGFCR GGDVDAALEI RKKMDQNGIE LDRVGFSALI CGMCKEGRVV DAERALREML RAGMKPDDVI YTMMMDAFCK KGDVQTSFRL
501: LKEMQRDGHV PSVVTYNVLL NGLCKLGQMK NADMLLDAML NIGVVPDDIT FNILLEGHHR HANSSKHYIP KPEIGTVADL ASYKSLVSEL YRASKEHRNR

Best Arabidopsis Sequence Match ( AT1G09680.1 )
(BLAST)

001: MFRIEILRCT LSQSHPQRFS RASFLLSTWY SQESVSAADN DDDPVLVKLS VAIRDSYKDP PLEFSSFTDC PSIRKVLPSL SVHHVVDLIN HNPLSLPQRS
101: IFAFFKFISS QPGFRFTVET YFVLARFLAV HEMFTEAQSL IELVVSRKGK NSASSVFISL VEMRVTPMCG FLVDALMITY TDLGFIPDAI QCFRLSRKHR
201: FDVPIRGCGN LLDRMMKLNP TGTIWGFYME ILDAGFPLNV YVFNILMNKF CKEGNISDAQ KVFDEITKRS LQPTVVSFNT LINGYCKVGN LDEGFRLKHQ
301: MEKSRTRPDV FTYSALINAL CKENKMDGAH GLFDEMCKRG LIPNDVIFTT LIHGHSRNGE IDLMKESYQK MLSKGLQPDI VLYNTLVNGF CKNGDLVAAR
401: NIVDGMIRRG LRPDKITYTT LIDGFCRGGD VETALEIRKE MDQNGIELDR VGFSALVCGM CKEGRVIDAE RALREMLRAG IKPDDVTYTM MMDAFCKKGD
501: AQTGFKLLKE MQSDGHVPSV VTYNVLLNGL CKLGQMKNAD MLLDAMLNIG VVPDDITYNT LLEGHHRHAN SSKRYIQKPE IGIVADLASY KSIVNELDRA
601: SKDHRNR

Arabidopsis Description

Putative pentatricopeptide repeat-containing protein At1g09680 [Source:UniProtKB/Swiss-Prot;Acc:O04491]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.