Factsheet for Bra040883.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 3
mitochondrion 1
cytosol 2
nucleus 1
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57780	Canola	endoplasmic reticulum	95.48	95.48
AT4G11690.1	Thale cress	endoplasmic reticulum	79.48	80.74
VIT_06s0004g04770.t01	Wine grape	plastid	56.0	57.19
PGSC0003DMT400058577	Potato	plastid	50.96	52.23
KRH50360	Soybean	cytosol, extracellular, plastid	50.43	52.16
KRH51875	Soybean	cytosol	50.78	51.41
KRH02112	Soybean	extracellular, mitochondrion	47.48	50.37
KRH51037	Soybean	endoplasmic reticulum, extracellular, plastid	38.43	47.63
Os05t0583950-00	Rice	mitochondrion	31.13	43.66
OQU87837	Sorghum	plastid	30.78	43.17
Zm00001d042911_P001	Maize	mitochondrion, plastid	30.43	42.68
GSMUA_Achr6P34120_001	Banana	cytosol	36.7	42.45
TraesCS3D01G353400.1	Wheat	cytosol	28.52	40.0
HORVU3Hr1G086290.19	Barley	plastid	27.83	39.31
TraesCS3A01G359100.1	Wheat	cytosol	27.65	38.78
Bra013432.1-P	Field mustard	cytosol	23.13	26.87
Bra019985.1-P	Field mustard	cytosol	26.26	24.67
Bra028204.1-P	Field mustard	cytosol	25.04	24.28
Bra015447.1-P	Field mustard	cytosol	18.09	23.85
Bra015229.1-P	Field mustard	mitochondrion	25.74	23.38
Bra022891.1-P	Field mustard	plastid	24.87	23.29
Bra017434.1-P	Field mustard	cytosol, plastid	21.91	22.62
Bra020001.1-P	Field mustard	mitochondrion	23.3	22.33
Bra035931.1-P	Field mustard	mitochondrion	24.52	21.79
Bra024554.1-P	Field mustard	cytosol	12.52	21.3
Bra025651.1-P	Field mustard	mitochondrion	27.48	21.21
Bra038853.1-P	Field mustard	mitochondrion	25.04	20.69
Bra005695.1-P	Field mustard	mitochondrion	25.74	19.97
Bra024831.1-P	Field mustard	mitochondrion	24.7	19.4
Bra025578.1-P	Field mustard	plastid	18.78	17.34
Bra002000.1-P	Field mustard	cytosol	8.87	16.83
Bra024552.1-P	Field mustard	cytosol	7.3	16.67
Bra026410.1-P	Field mustard	mitochondrion	19.3	8.42

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlantsGene:Bra040883	EnsemblPlants:Bra040883.1	EnsemblPlants:Bra040883.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009737
GO:GO:0009987	GO:GO:0080156	InterPro:IPR002885	InterPro:IPR011990	UniProt:M4FIF4	PFAM:PF01535
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI000253E9E2	SEG:seg	:	:	:	:

Description

AT4G11690 (E=4e-263) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrScaffold000295:+:3030..4757

Molecular Weight (calculated)

63860.6 Da

IEP (calculated)

8.091

GRAVY (calculated)

-0.069

Length

575 amino acids

Sequence
(BLAST)

001: MAVKAQKTLI LLANLIKVPP LKAFSLLNSS NLHGVQHTHE SFSVLLHLLL SGNLLPHAQS LLLQAITRRI HSQSFTPSSL LRYLTQSETS KPNSRLYEVI
101: INAYIQSQSL DSALSYFNEM IDKGLVPGSN CFNNLLTFVS GSSSFDEFWA FFNENKGRVV LDVYSFGIAI KACCESGEIH KSFHLLGELR ANGFSPNVVI
201: YTTLIDGCCK KGEIEKAKAL FFEMETIGLV ANERTYTVLI HGLFKNGLTK QGFETYEKMK EDGVLPNLYT YNCVMNQLCK DGRTKDAFKV FDEMRERGVS
301: CNVVTYNTLI GGLCREMNAS EAGRLMEQMK SDGINPNLIT YNTLIDGFCN AGKLGKALSL CRDLKSRGMS MSVVTYNILV SGFCKKGDTS GAAKIVKEME
401: ERGIKPSKVT YTILIDTFAR SDNMERAIQL RTSMESLGLV PDVHTYSVLI HGFCIKGQMN EASRLFRSMV EKKVEPNEVI YNTMILGYCR EGSSYRALRL
501: LTEMGDRELA PNVASYSYLV DVLCKEKKMK EAEDLVEKMI GSGMDPSASV CNMISSAKNG SLVAQTIDKS CLNVT

Best Arabidopsis Sequence Match ( AT4G11690.1 )
(BLAST)

001: MAAKSQKTLV LLANLIKFPP LKAFSLLNSP NFHEFQHTHE SISILLRLLL SGNLFSHAQS LLLQVISGKI HSQFFTSSSL LHYLTESETS KTKFRLYEVI
101: INSYVQSQSL NLSISYFNEM VDNGFVPGSN CFNYLLTFVV GSSSFNQWWS FFNENKSKVV LDVYSFGILI KGCCEAGEIE KSFDLLIELT EFGFSPNVVI
201: YTTLIDGCCK KGEIEKAKDL FFEMGKLGLV ANERTYTVLI NGLFKNGVKK QGFEMYEKMQ EDGVFPNLYT YNCVMNQLCK DGRTKDAFQV FDEMRERGVS
301: CNIVTYNTLI GGLCREMKLN EANKVVDQMK SDGINPNLIT YNTLIDGFCG VGKLGKALSL CRDLKSRGLS PSLVTYNILV SGFCRKGDTS GAAKMVKEME
401: ERGIKPSKVT YTILIDTFAR SDNMEKAIQL RLSMEELGLV PDVHTYSVLI HGFCIKGQMN EASRLFKSMV EKNCEPNEVI YNTMILGYCK EGSSYRALKL
501: LKEMEEKELA PNVASYRYMI EVLCKERKSK EAERLVEKMI DSGIDPSTSI LSLISRAKND SHVSSK

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g11690 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0D6]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.