Factsheet for HORVU3Hr1G086290.19

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 2
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G353400.1	Wheat	cytosol	88.45	87.8
TraesCS3A01G359100.1	Wheat	cytosol	88.21	87.56
Os05t0583950-00	Rice	mitochondrion	71.5	70.98
OQU87837	Sorghum	plastid	70.27	69.76
Zm00001d042911_P001	Maize	mitochondrion, plastid	68.8	68.29
GSMUA_Achr6P34120_001	Banana	cytosol	41.52	34.0
HORVU6Hr1G084410.1	Barley	cytosol, mitochondrion	16.95	31.51
PGSC0003DMT400058577	Potato	plastid	42.26	30.66
KRH50360	Soybean	cytosol, extracellular, plastid	40.54	29.68
VIT_06s0004g04770.t01	Wine grape	plastid	40.54	29.31
KRH51875	Soybean	cytosol	40.79	29.23
KRH02112	Soybean	extracellular, mitochondrion	38.57	28.97
AT4G11690.1	Thale cress	endoplasmic reticulum	38.82	27.92
Bra040883.1-P	Field mustard	endoplasmic reticulum	39.31	27.83
KRH51037	Soybean	endoplasmic reticulum, extracellular, plastid	31.2	27.37
HORVU1Hr1G093590.2	Barley	cytosol	15.97	27.31
CDX86757	Canola	endoplasmic reticulum, extracellular	38.57	27.3
CDY57780	Canola	endoplasmic reticulum	38.57	27.3
HORVU2Hr1G019920.1	Barley	cytosol	25.06	27.27
HORVU2Hr1G082620.1	Barley	plastid	30.22	24.31
HORVU2Hr1G019880.2	Barley	cytosol	19.16	21.67
HORVU1Hr1G042440.2	Barley	mitochondrion	29.73	21.12
HORVU7Hr1G028150.1	Barley	mitochondrion	22.6	18.22
HORVU7Hr1G023200.23	Barley	cytosol	29.98	17.58
HORVU2Hr1G080860.1	Barley	plastid	26.54	17.09
HORVU0Hr1G013090.3	Barley	cytosol, plastid	23.83	16.75
HORVU2Hr1G080360.2	Barley	mitochondrion	20.39	16.21
HORVU7Hr1G087760.14	Barley	cytosol, mitochondrion	27.52	16.21
HORVU6Hr1G087430.7	Barley	cytosol	24.32	16.05
HORVU4Hr1G074200.9	Barley	mitochondrion	26.54	15.84
HORVU5Hr1G066340.2	Barley	mitochondrion	23.83	15.65
HORVU5Hr1G042300.1	Barley	plastid	25.06	14.31
HORVU5Hr1G009510.3	Barley	cytosol	20.39	14.07
HORVU2Hr1G046710.2	Barley	cytosol, plastid	26.54	13.95
HORVU4Hr1G070310.1	Barley	plastid	25.06	12.2

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A287M2X6	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009737	GO:GO:0009987
GO:GO:0080156	EnsemblPlantsGene:HORVU3Hr1G086290	EnsemblPlants:HORVU3Hr1G086290.19	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF362	InterPro:Pentatricopeptide_repeat
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000B4702BC	:	:	:

Description

No Description!

Coordinates

chrchr3H:-:616560644..616562253

Molecular Weight (calculated)

44847.4 Da

IEP (calculated)

9.094

GRAVY (calculated)

-0.210

Length

407 amino acids

Sequence
(BLAST)

001: MSATTAAAVR RLCATGEVRS ALAQLARGAK AGDGALDVAA CTALVHACCR TGDVAEARRV FGVMPRLGLA PNEVTFTALI HGHFLLGRRE EGFALFEEMR
101: RGGIEPNIYT YNVLIGEWCR TGELEGARRL FDEMPLKGVA RNAVSYNTLI AGLCRHGRMK DAAGLLEMMR KEGIRPSIVT FNLLVDGYGK AGQMSNALHF
201: SNQIRAAGYQ PNTLTYNALI AGFCRARDIA RANRAFSDMK ERGLTPTNGT YTILIDALAR DGDMDKAFEM FADMRKAGFE VDVRTYGVLV HAFCMDGNMK
301: DARKLFRSME EKGVKANGVI YDMMIFGYGR EGNSYKAMKL ITEMRKNGLV PNFASYGLTI RSLCNDGKCP EAEALIKDMV RSAQWFTGHC QNLTKDDSDK
401: QIQSNKK

Best Arabidopsis Sequence Match ( AT1G12775.1 )
(BLAST)

001: MVRMMIRRLS SQASRFVQPR LLETGTLRIA LINCPNELLF CCERGFSTFS DRNLSYRDKL SSGLVGIKAD DAVDLFRDMI QSRPLPTVID FNRLFSAIAK
101: TKQYELVLAL CKQMESKGIA HSIYTLSIMI NCFCRCRKLS YAFSTMGKIM KLGYEPDTVI FNTLLNGLCL ECRVSEALEL VDRMVEMGHK PTLITLNTLV
201: NGLCLNGKVS DAVVLIDRMV ETGFQPNEVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKDGSLD NAFNLFNEME IKGFKADIIT
301: YNTLIGGFCN AGRWDDGAKL LRDMIKRKIS PNVVTFSVLI DSFVKEGKLR EADQLLKEMM QRGIAPNTIT YNSLIDGFCK ENRLEEAIQM VDLMISKGCD
401: PDIMTFNILI NGYCKANRID DGLELFREMS LRGVIANTVT YNTLVQGFCQ SGKLEVAKKL FQEMVSRRVR PDIVSYKILL DGLCDNGELE KALEIFGKIE
501: KSKMELDIGI YMIIIHGMCN ASKVDDAWDL FCSLPLKGVK LDARAYNIMI SELCRKDSLS KADILFRKMT EEGHAPDELT YNILIRAHLG DDDATTAAEL
601: IEEMKSSGFP ADVSTVKMVI NMLSSGELDK SFLDMLSTTR ASLK

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12775, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LPX2]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.