CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 4
nucleus 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	plastid
Plant-mPloc:	nucleus, plastid
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042911_P001	Maize	mitochondrion, plastid	90.98	90.98
Os05t0583950-00	Rice	mitochondrion	76.59	76.59
TraesCS3D01G353400.1	Wheat	cytosol	73.9	73.9
TraesCS3A01G359100.1	Wheat	cytosol	73.17	73.17
HORVU3Hr1G086290.19	Barley	plastid	69.76	70.27
GSMUA_Achr6P34120_001	Banana	cytosol	42.68	35.21
KRH50360	Soybean	cytosol, extracellular, plastid	43.17	31.83
KRH51875	Soybean	cytosol	43.41	31.34
AT4G11690.1	Thale cress	endoplasmic reticulum	43.17	31.27
KRH02112	Soybean	extracellular, mitochondrion	41.22	31.18
PGSC0003DMT400058577	Potato	plastid	42.44	31.02
Bra040883.1-P	Field mustard	endoplasmic reticulum	43.17	30.78
VIT_06s0004g04770.t01	Wine grape	plastid	41.95	30.55
CDX86757	Canola	endoplasmic reticulum, extracellular	42.44	30.26
OQU81794	Sorghum	mitochondrion, peroxisome	29.51	30.02
CDY57780	Canola	endoplasmic reticulum	41.95	29.91
KRH51037	Soybean	endoplasmic reticulum, extracellular, plastid	33.41	29.53
EER99880	Sorghum	cytosol	28.54	24.48
OQU75844	Sorghum	cytosol	31.22	23.23
OQU90004	Sorghum	cytosol	26.83	23.16
KXG31660	Sorghum	mitochondrion	19.27	23.1
KXG40115	Sorghum	cytosol	22.68	21.53
EES07796	Sorghum	cytosol, endoplasmic reticulum, extracellular	27.8	19.0
OQU83816	Sorghum	mitochondrion	19.02	17.57
EES10956	Sorghum	mitochondrion	25.12	16.78
EER96725	Sorghum	mitochondrion, plastid	24.88	16.01
EES09272	Sorghum	plastid	26.83	15.13
EES00885	Sorghum	cytosol, mitochondrion	20.49	14.66
KXG39937	Sorghum	cytosol, plastid	28.05	14.48
OQU78719	Sorghum	cytosol	26.34	14.14
KXG22891	Sorghum	mitochondrion	17.07	11.97

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:8057782	UniProt:C5XPP5	ProteinID:EES01737.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009719	GO:GO:0009737
GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0080156	GO:GO:0090305	InterPro:IPR002885
InterPro:IPR011990	ProteinID:OQU87836.1	EnsemblPlants:OQU87837	ProteinID:OQU87837	ProteinID:OQU87837.1	ProteinID:OQU87838.1
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF362	InterPro:Pentatricopeptide_repeat
EnsemblPlantsGene:SORBI_3003G352100	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A8450A	RefSeq:XP_002456617.1	SEG:seg

Description

hypothetical protein

Coordinates

chr3:+:67118142..67120860

Molecular Weight (calculated)

45147.1 Da

IEP (calculated)

8.240

GRAVY (calculated)

-0.012

Length

410 amino acids

Sequence
(BLAST)

001: MAATTAAAVR RLCAAAEVRS ALAVLARGTK SGDAALDVAA CTALVHGCCQ SGDVAEARRV FDVMPRLGVT PNEVTYTALI HGYFVRGQRE MGFALVGEMR
101: RGGVEPNLYT YNCLVGEWCR TGEFKSARLL FDEMPLKGVV RNVVSYNILI AGLCRHGKLK DAAQLFEAMR REGIHPSMVT FNLLIDGYGK AGKMSNALHF
201: FNQMKAAGLQ PSVVTYNELI GGFCRARDIA HAIRAFSDMK ERRLAPTKVT YTILIGAFAK ENEMDRAFEM LSEMEKAGLE VDVQSYGVLL HALCMEGKMM
301: HARKLFQSMD SKGVKPNNVL YDMMIYGYGR EGSSYKALRL IMEMRKSGLI PNVASYCLTI RLLCNEGKCQ EAEALIGDME DAGLQTSESI CRVLFDAKAR
401: LHSSTDDPFT

Best Arabidopsis Sequence Match ( AT4G11690.1 )
(BLAST)

001: MAAKSQKTLV LLANLIKFPP LKAFSLLNSP NFHEFQHTHE SISILLRLLL SGNLFSHAQS LLLQVISGKI HSQFFTSSSL LHYLTESETS KTKFRLYEVI
101: INSYVQSQSL NLSISYFNEM VDNGFVPGSN CFNYLLTFVV GSSSFNQWWS FFNENKSKVV LDVYSFGILI KGCCEAGEIE KSFDLLIELT EFGFSPNVVI
201: YTTLIDGCCK KGEIEKAKDL FFEMGKLGLV ANERTYTVLI NGLFKNGVKK QGFEMYEKMQ EDGVFPNLYT YNCVMNQLCK DGRTKDAFQV FDEMRERGVS
301: CNIVTYNTLI GGLCREMKLN EANKVVDQMK SDGINPNLIT YNTLIDGFCG VGKLGKALSL CRDLKSRGLS PSLVTYNILV SGFCRKGDTS GAAKMVKEME
401: ERGIKPSKVT YTILIDTFAR SDNMEKAIQL RLSMEELGLV PDVHTYSVLI HGFCIKGQMN EASRLFKSMV EKNCEPNEVI YNTMILGYCK EGSSYRALKL
501: LKEMEEKELA PNVASYRYMI EVLCKERKSK EAERLVEKMI DSGIDPSTSI LSLISRAKND SHVSSK

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g11690 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0D6]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.