Factsheet for Zm00001d042911_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 3
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
iPSORT:	secretory
MultiLoc:	mitochondrion
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU87837	Sorghum	plastid	90.98	90.98
Os05t0583950-00	Rice	mitochondrion	75.12	75.12
TraesCS3D01G353400.1	Wheat	cytosol	73.17	73.17
TraesCS3A01G359100.1	Wheat	cytosol	72.2	72.2
HORVU3Hr1G086290.19	Barley	plastid	68.29	68.8
GSMUA_Achr6P34120_001	Banana	cytosol	43.41	35.81
KRH50360	Soybean	cytosol, extracellular, plastid	43.66	32.19
KRH51875	Soybean	cytosol	43.9	31.69
KRH02112	Soybean	extracellular, mitochondrion	41.71	31.55
AT4G11690.1	Thale cress	endoplasmic reticulum	43.17	31.27
PGSC0003DMT400058577	Potato	plastid	42.68	31.19
VIT_06s0004g04770.t01	Wine grape	plastid	41.95	30.55
Bra040883.1-P	Field mustard	endoplasmic reticulum	42.68	30.43
KRH51037	Soybean	endoplasmic reticulum, extracellular, plastid	34.39	30.39
CDX86757	Canola	endoplasmic reticulum, extracellular	41.95	29.91
CDY57780	Canola	endoplasmic reticulum	41.46	29.57
Zm00001d039548_P001	Maize	mitochondrion	25.85	23.35
Zm00001d003294_P001	Maize	plastid	29.02	22.71
Zm00001d007129_P001	Maize	endoplasmic reticulum, plastid	28.78	21.97
Zm00001d007127_P001	Maize	endoplasmic reticulum, plastid	27.8	21.88
Zm00001d007125_P001	Maize	endoplasmic reticulum, plastid	28.54	21.79
Zm00001d003397_P001	Maize	endoplasmic reticulum, extracellular	25.61	21.69
Zm00001d003396_P001	Maize	endoplasmic reticulum, extracellular	25.61	21.69
Zm00001d000093_P001	Maize	cytosol	26.1	20.23
Zm00001d018528_P001	Maize	cytosol	26.59	18.76
Zm00001d045319_P001	Maize	plastid	31.46	18.67
Zm00001d010121_P001	Maize	plastid	30.98	18.38
Zm00001d048880_P001	Maize	mitochondrion	30.24	18.34
Zm00001d020436_P001	Maize	mitochondrion	26.34	17.01
Zm00001d023302_P001	Maize	mitochondrion	29.02	17.0
Zm00001d030479_P001	Maize	plastid	20.73	16.87
Zm00001d027800_P001	Maize	mitochondrion	26.34	16.64
Zm00001d006478_P001	Maize	mitochondrion	28.78	15.84
Zm00001d044707_P001	Maize	plastid	26.83	15.45
Zm00001d052540_P001	Maize	plastid	26.34	14.98
Zm00001d009391_P001	Maize	cytosol	20.24	14.49
Zm00001d023422_P001	Maize	plastid	25.12	14.39
Zm00001d028107_P001	Maize	nucleus	21.95	12.61

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100283714	MapMan:35.1	UniProt:B6TKX7	EMBL:EU965642	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009737
GO:GO:0009987	GO:GO:0080156	InterPro:IPR002885	InterPro:IPR011990	ProteinID:ONM36529.1	PFAM:PF01535
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF362	InterPro:Pentatricopeptide_repeat
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000182E1A8	EnsemblPlantsGene:Zm00001d042911	EnsemblPlants:Zm00001d042911_P001	EnsemblPlants:Zm00001d042911_T001

Description

EMB2745

Coordinates

chr3:-:183806507..183807739

Molecular Weight (calculated)

45382.8 Da

IEP (calculated)

8.199

GRAVY (calculated)

0.094

Length

410 amino acids

Sequence
(BLAST)

001: MAASTAAVVR RLCVAAEVRS ALAVLARGTK SGDAALDVAA CTALVHVCCQ SGDVAEARRV FDVMPRLGVA PNEVTYTALI NGYFVRGHRE MGFALFAEMR
101: RDGVEPNLYT YNCLIGEWCR TGEFKSARLL FDEMPVKGVV HNVVSYNILI AGLCRHSKLK DAVQLFEAMR REGIRPSIVT FNLLIDGYGK AGKMANALHF
201: FNQMKAAGLP PSVVTYNELI CGFCRVRDIA RAVRAFLDMK ERGLAPTKVT YTILIAAFAK ENEMDRAFMM LSEMEKAGLE VDVQSYGVLL HALCMEGKMM
301: HARKLFQSMD LKGVKPNSVL YDMMIYGYGR EGSSYKALRL IMEMRKNGLI PNVASYCLTI RLLCNEGKCQ EAEALIDDME HAGLQTSETI CRILLDAKAR
401: LHGSTDDSFT

Best Arabidopsis Sequence Match ( AT4G11690.1 )
(BLAST)

001: MAAKSQKTLV LLANLIKFPP LKAFSLLNSP NFHEFQHTHE SISILLRLLL SGNLFSHAQS LLLQVISGKI HSQFFTSSSL LHYLTESETS KTKFRLYEVI
101: INSYVQSQSL NLSISYFNEM VDNGFVPGSN CFNYLLTFVV GSSSFNQWWS FFNENKSKVV LDVYSFGILI KGCCEAGEIE KSFDLLIELT EFGFSPNVVI
201: YTTLIDGCCK KGEIEKAKDL FFEMGKLGLV ANERTYTVLI NGLFKNGVKK QGFEMYEKMQ EDGVFPNLYT YNCVMNQLCK DGRTKDAFQV FDEMRERGVS
301: CNIVTYNTLI GGLCREMKLN EANKVVDQMK SDGINPNLIT YNTLIDGFCG VGKLGKALSL CRDLKSRGLS PSLVTYNILV SGFCRKGDTS GAAKMVKEME
401: ERGIKPSKVT YTILIDTFAR SDNMEKAIQL RLSMEELGLV PDVHTYSVLI HGFCIKGQMN EASRLFKSMV EKNCEPNEVI YNTMILGYCK EGSSYRALKL
501: LKEMEEKELA PNVASYRYMI EVLCKERKSK EAERLVEKMI DSGIDPSTSI LSLISRAKND SHVSSK

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g11690 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0D6]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.