Factsheet for Zm00001d027800_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG40115	Sorghum	cytosol	61.63	92.59
TraesCS4B01G280500.1	Wheat	plastid	73.04	80.75
TraesCS4A01G023000.1	Wheat	plastid	72.73	80.41
TraesCS4D01G279000.1	Wheat	mitochondrion	79.51	79.51
HORVU4Hr1G074200.9	Barley	mitochondrion	79.97	76.1
Os03t0165100-00	Rice	cytosol, mitochondrion	78.74	70.19
GSMUA_AchrUn_...	Banana	mitochondrion	47.77	53.91
PGSC0003DMT400024895	Potato	cytosol	36.67	51.97
VIT_06s0009g03510.t01	Wine grape	mitochondrion	47.46	50.57
KRH14574	Soybean	plastid	47.3	47.97
PGSC0003DMT400003372	Potato	mitochondrion	46.69	41.51
Bra005695.1-P	Field mustard	mitochondrion	45.3	39.68
CDY11211	Canola	mitochondrion	45.15	39.54
CDX80791	Canola	mitochondrion	35.59	38.44
AT5G01110.2	Thale cress	cytosol, plastid	44.22	37.91
Zm00001d039548_P001	Maize	mitochondrion	22.03	31.5
Zm00001d000093_P001	Maize	cytosol	24.19	29.68
Zm00001d003397_P001	Maize	endoplasmic reticulum, extracellular	22.03	29.55
Zm00001d003396_P001	Maize	endoplasmic reticulum, extracellular	22.03	29.55
Zm00001d003294_P001	Maize	plastid	22.5	27.86
Zm00001d045319_P001	Maize	plastid	29.12	27.35
Zm00001d010121_P001	Maize	plastid	28.97	27.21
Zm00001d007125_P001	Maize	endoplasmic reticulum, plastid	22.19	26.82
Zm00001d042911_P001	Maize	mitochondrion, plastid	16.64	26.34
Zm00001d007129_P001	Maize	endoplasmic reticulum, plastid	21.57	26.07
Zm00001d007127_P001	Maize	endoplasmic reticulum, plastid	20.49	25.53
Zm00001d052540_P001	Maize	plastid	28.04	25.24
Zm00001d044707_P001	Maize	plastid	27.58	25.14
Zm00001d023422_P001	Maize	plastid	27.73	25.14
Zm00001d020436_P001	Maize	mitochondrion	24.5	25.04
Zm00001d006478_P001	Maize	mitochondrion	28.66	24.97
Zm00001d023302_P001	Maize	mitochondrion	26.81	24.86
Zm00001d018528_P001	Maize	cytosol	21.57	24.1
Zm00001d009391_P001	Maize	cytosol	19.11	21.64
Zm00001d048880_P001	Maize	mitochondrion	22.34	21.45
Zm00001d028107_P001	Maize	nucleus	22.5	20.45
Zm00001d030479_P001	Maize	plastid	14.02	18.06

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:103631761	MapMan:35.1	UniProt:A0A1D6JPP3	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	ProteinID:ONL93970.1	PFAM:PF12854	PFAM:PF13041
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF648	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000221DE43	EnsemblPlantsGene:Zm00001d027800	EnsemblPlants:Zm00001d027800_P001	EnsemblPlants:Zm00001d027800_T001	SEG:seg

Description

Pentatricopeptide repeat-containing protein

Coordinates

chr1:+:13809656..13811605

Molecular Weight (calculated)

72310.4 Da

IEP (calculated)

8.032

GRAVY (calculated)

-0.153

Length

649 amino acids

Sequence
(BLAST)

001: MAIPRRLSCL PTVAAATKWS AGNLAIDIGT IGARPSTAAL AAAATAAAAA GRASECQSLL LRMSRRRGAS RREIVSSLLA SSPTPQPQVF DLLIRTYTQS
101: RKPREAFEAF RLLLDHRVPV PASASNALLA VLSRAGWPHL AQEAYRLVLS SDSEVNAYTL NIMVHSYCKT LEFDGADTVI SEMEKRCVFP DVVTHNVLID
201: ARFRAGDVDA AIALVDSMAN RGLKPGIVTY NSVLKGLCKH RRFDKAKEVF RTMDQCSVAP DVRSFNILIG GFCRVGEVKE AVKFYKEMQH RYVTPDVVSF
301: SCLIGLFSRR GEMDHAGAYL REMKGLGLVP DGVIYTMVIG GFCRAGSMSE ALRVRDEMVG FGCLPDVVTY NTLLNGLCKQ HRLLDAEKLL NEMEERGVTP
401: DLCTFTTLIH GYCRQGNFEN ALQLFDTLLR QRLRPDVVTY NSLIDGMCRK GDLAKANELW DDMHAREILP NHITYSILID SHCEKGQVED AFGFLDEMVK
501: KGNLPNIRTY NSIIKGYCRS GNVKKGQQFL QKMRQDNVFP DLITFNTLIH GYIKEENMHG AFNVFNIMEK EMVRPDAVTY NMIINGFSEQ GNMQDAGRVF
601: KGMGDSGIEP DRYTYMSLIN GHVTAGNSKQ AFQLHDEMIH RGFAPDDKF

Best Arabidopsis Sequence Match ( AT5G01110.2 )
(BLAST)

001: MNQTTVKVFK FQFLFSIEIK LSLSQPQKMI VHRIIPSRVK DPLTRFKPLK NLTTSSSPVF EPSSSSSSSS SSASFSVSDS FLVEKICFSL KQGNNNVRNH
101: LIRLNPLAVV EVLYRCRNDL TLGQRFVDQL GFHFPNFKHT SLSLSAMIHI LVRSGRLSDA QSCLLRMIRR SGVSRLEIVN SLDSTFSNCG SNDSVFDLLI
201: RTYVQARKLR EAHEAFTLLR SKGFTVSIDA CNALIGSLVR IGWVELAWGV YQEISRSGVG INVYTLNIMV NALCKDGKME KVGTFLSQVQ EKGVYPDIVT
301: YNTLISAYSS KGLMEEAFEL MNAMPGKGFS PGVYTYNTVI NGLCKHGKYE RAKEVFAEML RSGLSPDSTT YRSLLMEACK KGDVVETEKV FSDMRSRDVV
401: PDLVCFSSMM SLFTRSGNLD KALMYFNSVK EAGLIPDNVI YTILIQGYCR KGMISVAMNL RNEMLQQGCA MDVVTYNTIL HGLCKRKMLG EADKLFNEMT
501: ERALFPDSYT LTILIDGHCK LGNLQNAMEL FQKMKEKRIR LDVVTYNTLL DGFGKVGDID TAKEIWADMV SKEILPTPIS YSILVNALCS KGHLAEAFRV
601: WDEMISKNIK PTVMICNSMI KGYCRSGNAS DGESFLEKMI SEGFVPDCIS YNTLIYGFVR EENMSKAFGL VKKMEEEQGG LVPDVFTYNS ILHGFCRQNQ
701: MKEAEVVLRK MIERGVNPDR STYTCMINGF VSQDNLTEAF RIHDEMLQRG FSPDDKF

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:TAIR;Acc:AT5G01110]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.