Factsheet for PGSC0003DMT400003372

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400024895	Potato	cytosol	59.73	95.2
VIT_06s0009g03510.t01	Wine grape	mitochondrion	55.07	66.01
KRH14574	Soybean	plastid	49.32	56.25
GSMUA_AchrUn_...	Banana	mitochondrion	44.25	56.17
AT5G01110.2	Thale cress	cytosol, plastid	54.11	52.18
CDY11211	Canola	mitochondrion	51.92	51.15
TraesCS4A01G023000.1	Wheat	plastid	40.96	50.94
KXG40115	Sorghum	cytosol	30.14	50.93
Bra005695.1-P	Field mustard	mitochondrion	51.64	50.88
TraesCS4B01G280500.1	Wheat	plastid	40.82	50.77
TraesCS4D01G279000.1	Wheat	mitochondrion	42.6	47.92
CDX80791	Canola	mitochondrion	38.77	47.09
Zm00001d027800_P001	Maize	mitochondrion	41.51	46.69
HORVU4Hr1G074200.9	Barley	mitochondrion	42.6	45.6
Os03t0165100-00	Rice	cytosol, mitochondrion	40.96	41.07
PGSC0003DMT400066731	Potato	mitochondrion, plastid	26.71	31.55
PGSC0003DMT400034430	Potato	cytosol	18.63	28.33
PGSC0003DMT400066369	Potato	mitochondrion	29.59	28.16
PGSC0003DMT400058276	Potato	mitochondrion	28.63	27.79
PGSC0003DMT400078379	Potato	cytosol	26.16	27.6
PGSC0003DMT400015805	Potato	endoplasmic reticulum, extracellular	22.05	26.35
PGSC0003DMT400015807	Potato	endoplasmic reticulum, extracellular	22.05	26.35
PGSC0003DMT400007278	Potato	mitochondrion	21.78	26.28
PGSC0003DMT400027103	Potato	cytosol	14.66	26.16
PGSC0003DMT400043860	Potato	endoplasmic reticulum, golgi	26.44	25.36
PGSC0003DMT400043863	Potato	endoplasmic reticulum, golgi	26.44	25.36
PGSC0003DMT400058577	Potato	plastid	18.63	24.24
PGSC0003DMT400015722	Potato	cytosol	17.12	23.58
PGSC0003DMT400023499	Potato	plastid	20.14	23.37
PGSC0003DMT400066275	Potato	cytosol	9.59	21.54
PGSC0003DMT400026741	Potato	mitochondrion	20.0	20.39
PGSC0003DMT400040701	Potato	mitochondrion	15.21	20.18
PGSC0003DMT400027098	Potato	cytosol	14.52	17.15
PGSC0003DMT400027113	Potato	cytosol, plastid	21.37	15.45

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102603102	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	UniProt:M0ZLJ1	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041
EnsemblPlantsGene:PGSC0003DMG400001336	PGSC:PGSC0003DMG400001336	EnsemblPlants:PGSC0003DMT400003372	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF770
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00029486DD
RefSeq:XP_015162444.1	:	:	:	:	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400001336]

Coordinates

chr2:-:46092747..46094939

Molecular Weight (calculated)

81934.5 Da

IEP (calculated)

7.057

GRAVY (calculated)

-0.108

Length

730 amino acids

Sequence
(BLAST)

001: MEAARRICLP KSTIRGTVTC ASLVNTTHLE NSPKSPISEP QHFANGSSTP PSDDTFLVQK ILWNLKQGKP ITNSLHGFNP STFLEILGNC RDNLHLAQTF
101: INLVSVNCPN FKHCSRSLSA TVHVLIRSKR VADAQGFILR MIRRSGVSRI EIVESLVSTY GVCGSNPYAF DLLIRTYVQA RKIREAVEVF RLLQRRNLCV
201: PINACNGLLG GLVKIGWVDL AWEVYGEMTG SSIQPNVYTL NIMVNALCKD GKIESVNPFI EEMEKKGIFP DMVTYNTLIN AYCHEGLLEE AYEVINIMKA
301: TGLRPCLLTY NSILNGLCKN GQYGRARDLL LVEMEESGLS PDTASYNALL AECCKTGNVL EAESVFKEMS CRAIIPDLVS YSSLIGLFSR TGRLDRSLAY
401: YEHMKHKGLK PDNVVYTILI GGFCRNGSMK EAMKMRDEML EQSLVMDVVT YNTILNGLCK GKMLHEADEL FNEMLERDVN PDFYTLTTLI NGYCKCGNMD
501: KAQTLFEAML LRNLKPDVVT YNSLIDGFCK VGDMEKAFSL RDEMISVNIS PNYITYSILI NGFCNKGRVS DALRLWDDMI ILGIKPTIVT CNSIIKGYCR
601: SGDASRAAKF RNKMQSQGLF PDSITYNTLL DGFIREENMA KALDLVNEMG NQGLSPDVIS YNTILDGFCK FGRMQEANML YRKMVERGIN PDRSTYTSLI
701: NGHVSQDNLK EAFHFHDEML QMGFIPDDKF

Best Arabidopsis Sequence Match ( AT5G01110.2 )
(BLAST)

001: MNQTTVKVFK FQFLFSIEIK LSLSQPQKMI VHRIIPSRVK DPLTRFKPLK NLTTSSSPVF EPSSSSSSSS SSASFSVSDS FLVEKICFSL KQGNNNVRNH
101: LIRLNPLAVV EVLYRCRNDL TLGQRFVDQL GFHFPNFKHT SLSLSAMIHI LVRSGRLSDA QSCLLRMIRR SGVSRLEIVN SLDSTFSNCG SNDSVFDLLI
201: RTYVQARKLR EAHEAFTLLR SKGFTVSIDA CNALIGSLVR IGWVELAWGV YQEISRSGVG INVYTLNIMV NALCKDGKME KVGTFLSQVQ EKGVYPDIVT
301: YNTLISAYSS KGLMEEAFEL MNAMPGKGFS PGVYTYNTVI NGLCKHGKYE RAKEVFAEML RSGLSPDSTT YRSLLMEACK KGDVVETEKV FSDMRSRDVV
401: PDLVCFSSMM SLFTRSGNLD KALMYFNSVK EAGLIPDNVI YTILIQGYCR KGMISVAMNL RNEMLQQGCA MDVVTYNTIL HGLCKRKMLG EADKLFNEMT
501: ERALFPDSYT LTILIDGHCK LGNLQNAMEL FQKMKEKRIR LDVVTYNTLL DGFGKVGDID TAKEIWADMV SKEILPTPIS YSILVNALCS KGHLAEAFRV
601: WDEMISKNIK PTVMICNSMI KGYCRSGNAS DGESFLEKMI SEGFVPDCIS YNTLIYGFVR EENMSKAFGL VKKMEEEQGG LVPDVFTYNS ILHGFCRQNQ
701: MKEAEVVLRK MIERGVNPDR STYTCMINGF VSQDNLTEAF RIHDEMLQRG FSPDDKF

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:TAIR;Acc:AT5G01110]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.