Factsheet for PGSC0003DMT400066369

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g108410.1.1	Tomato	mitochondrion	96.74	96.74
PGSC0003DMT400066275	Potato	cytosol	38.98	92.0
VIT_03s0063g00930.t01	Wine grape	cytosol, plastid	63.23	63.65
CDY30265	Canola	mitochondrion	55.67	58.49
CDX74435	Canola	mitochondrion	56.58	58.26
AT5G39710.1	Thale cress	mitochondrion	56.58	58.1
Bra025651.1-P	Field mustard	mitochondrion	56.19	57.85
KRG89236	Soybean	plastid	55.02	54.24
OQU75844	Sorghum	cytosol	35.33	49.18
KRH49758	Soybean	plastid	43.81	47.73
GSMUA_Achr3P04340_001	Banana	cytosol	40.29	46.96
Os06t0152500-00	Rice	plastid	40.55	44.81
Zm00001d010121_P001	Maize	plastid	39.63	43.99
Zm00001d045319_P001	Maize	plastid	39.5	43.85
TraesCS7A01G109000.1	Wheat	plastid	39.37	43.45
TraesCS7D01G103900.1	Wheat	plastid	38.85	42.88
TraesCS7B01G006900.1	Wheat	plastid	38.59	42.59
HORVU7Hr1G023200.23	Barley	cytosol	37.81	41.79
PGSC0003DMT400024895	Potato	cytosol	20.21	33.84
PGSC0003DMT400034430	Potato	cytosol	19.69	31.46
PGSC0003DMT400003372	Potato	mitochondrion	28.16	29.59
PGSC0003DMT400007278	Potato	mitochondrion	23.34	29.59
PGSC0003DMT400058577	Potato	plastid	21.51	29.41
PGSC0003DMT400066731	Potato	mitochondrion, plastid	23.6	29.29
PGSC0003DMT400015722	Potato	cytosol	19.56	28.3
PGSC0003DMT400078379	Potato	cytosol	25.03	27.75
PGSC0003DMT400058276	Potato	mitochondrion	25.95	26.46
PGSC0003DMT400015805	Potato	endoplasmic reticulum, extracellular	20.99	26.35
PGSC0003DMT400015807	Potato	endoplasmic reticulum, extracellular	20.99	26.35
PGSC0003DMT400043863	Potato	endoplasmic reticulum, golgi	26.08	26.28
PGSC0003DMT400043860	Potato	endoplasmic reticulum, golgi	26.08	26.28
PGSC0003DMT400027103	Potato	cytosol	13.04	24.45
PGSC0003DMT400026741	Potato	mitochondrion	22.82	24.44
PGSC0003DMT400023499	Potato	plastid	19.3	23.53
PGSC0003DMT400040701	Potato	mitochondrion	13.04	18.18
PGSC0003DMT400027113	Potato	cytosol, plastid	19.95	15.15
PGSC0003DMT400027098	Potato	cytosol	11.86	14.72

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102602481	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	InterPro:IPR002885
InterPro:IPR011990	UniProt:M1CFG5	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	EnsemblPlantsGene:PGSC0003DMG401025809
PGSC:PGSC0003DMG401025809	EnsemblPlants:PGSC0003DMT400066369	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF280	InterPro:Pentatricopeptide_repeat
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000294AFE9	RefSeq:XP_006346446.1	RefSeq:XP_006346447.1
RefSeq:XP_015163762.1	RefSeq:XP_015163763.1	RefSeq:XP_015163764.1	RefSeq:XP_015163765.1	RefSeq:XP_015163766.1	RefSeq:XP_015163767.1
RefSeq:XP_015163768.1	RefSeq:XP_015163769.1	RefSeq:XP_015163770.1	RefSeq:XP_015163771.1	RefSeq:XP_015163772.1	RefSeq:XP_015163773.1
RefSeq:XP_015163774.1	RefSeq:XP_015163775.1	RefSeq:XP_015163776.1	SEG:seg	:	:

Description

EMB2745 [Source:PGSC_GENE;Acc:PGSC0003DMG401025809]

Coordinates

chr1:+:84809946..84814427

Molecular Weight (calculated)

86607.6 Da

IEP (calculated)

8.045

GRAVY (calculated)

-0.062

Length

767 amino acids

Sequence
(BLAST)

001: MLLVKPYRRA LHSSTRQVQS KTLDSPPSSS STLFVDRAVS ILKGYDPISL DSISSQFTPQ YASSVLFQCR FDKPLVLRFI NWARNRQFFN LQCKCISIHI
101: LTRFKLYKTS QSLAEDVALK FGHNKGELVF SCLRDTYHSC KSSSAVFDLM VKSYSHLKMI DRAMNIFELA KFNGFMLTVL SYNSILDALI RVSCNGSFEL
201: AQKFYDDMVQ SGVSPNVYTY NIMIRGLCAK GDLQKGLVVF NEMEKTGCLR NVVTYNTIIG GYCKIGKVDE AVELLKLMQV RNLEPTVVTY NAIINGLCRE
301: GRMKETSEIL EEMRGNGLMP DEVTYNTLVN GYCREGNFHQ ALVLHSEMLR NGLSPDVVTY TSLINSMCKT GSLHRAMEFF DQLHARGLYP NDRTYTTLIV
401: GFSQQGLMNE AYKLLNEMIS NGLSPSIVTY NALINGHCAV GRMEDALRVT QEMEQRRLVP DVVTYSTIIS GFCRNCGLER AFCVKQLMVE KGVLPDVITY
501: SSLIQGLCEQ QRLTEACELF QEMLRVGLQP DKFTYTTLIG AYCANGDIKG AFHLHNKMIY KGFFPDVVTY NVLINGLNKQ ARTREAKRLL FKLLYEQSVP
601: NSVTYDMLIE SCKDLELKSA VDLIKGFCMK GLLNEADQVF ELMLQKHKKP SEVAYNLLIH GHSRGGNLHR ALNLFREMAN LGFIPHTVSI IVLMKELFKE
701: GMSEELHQVI QSTLETCKLA DGELAKVIVE VNYKEGNMDA VFNALTEMAK DGLLPNSGKT AFCHMPQ

Best Arabidopsis Sequence Match ( AT5G39710.1 )
(BLAST)

001: MFLTKTLIRR SLSTFASSPS DSLLADKALT FLKRHPYQLH HLSANFTPEA ASNLLLKSQN DQALILKFLN WANPHQFFTL RCKCITLHIL TKFKLYKTAQ
101: ILAEDVAAKT LDDEYASLVF KSLQETYDLC YSTSSVFDLV VKSYSRLSLI DKALSIVHLA QAHGFMPGVL SYNAVLDATI RSKRNISFAE NVFKEMLESQ
201: VSPNVFTYNI LIRGFCFAGN IDVALTLFDK METKGCLPNV VTYNTLIDGY CKLRKIDDGF KLLRSMALKG LEPNLISYNV VINGLCREGR MKEVSFVLTE
301: MNRRGYSLDE VTYNTLIKGY CKEGNFHQAL VMHAEMLRHG LTPSVITYTS LIHSMCKAGN MNRAMEFLDQ MRVRGLCPNE RTYTTLVDGF SQKGYMNEAY
401: RVLREMNDNG FSPSVVTYNA LINGHCVTGK MEDAIAVLED MKEKGLSPDV VSYSTVLSGF CRSYDVDEAL RVKREMVEKG IKPDTITYSS LIQGFCEQRR
501: TKEACDLYEE MLRVGLPPDE FTYTALINAY CMEGDLEKAL QLHNEMVEKG VLPDVVTYSV LINGLNKQSR TREAKRLLLK LFYEESVPSD VTYHTLIENC
601: SNIEFKSVVS LIKGFCMKGM MTEADQVFES MLGKNHKPDG TAYNIMIHGH CRAGDIRKAY TLYKEMVKSG FLLHTVTVIA LVKALHKEGK VNELNSVIVH
701: VLRSCELSEA EQAKVLVEIN HREGNMDVVL DVLAEMAKDG FLPNGIS

Arabidopsis Description

EMB2745Pentatricopeptide repeat-containing protein At5g39710 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIX3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.