Factsheet for Solyc01g108410.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066369	Potato	mitochondrion	96.74	96.74
VIT_03s0063g00930.t01	Wine grape	cytosol, plastid	63.23	63.65
CDY30265	Canola	mitochondrion	55.93	58.77
CDX74435	Canola	mitochondrion	56.84	58.52
AT5G39710.1	Thale cress	mitochondrion	56.84	58.37
Bra025651.1-P	Field mustard	mitochondrion	56.45	58.12
KRG89236	Soybean	plastid	55.02	54.24
OQU75844	Sorghum	cytosol	35.85	49.91
KRH49758	Soybean	plastid	43.94	47.87
GSMUA_Achr3P04340_001	Banana	cytosol	40.29	46.96
Zm00001d010121_P001	Maize	plastid	40.16	44.57
Zm00001d045319_P001	Maize	plastid	40.03	44.43
Os06t0152500-00	Rice	plastid	40.03	44.24
TraesCS7A01G109000.1	Wheat	plastid	39.11	43.17
TraesCS7D01G103900.1	Wheat	plastid	38.59	42.59
TraesCS7B01G006900.1	Wheat	plastid	38.33	42.3
HORVU7Hr1G023200.23	Barley	cytosol	37.81	41.79
Solyc11g011410.1.1	Tomato	cytosol	20.21	32.29
Solyc01g109060.2.1	Tomato	mitochondrion	23.86	29.61
Solyc01g100450.1.1	Tomato	mitochondrion	23.08	29.26
Solyc07g047620.1.1	Tomato	cytosol, mitochondrion	19.82	28.68
Solyc05g008560.1.1	Tomato	mitochondrion	25.95	26.39
Solyc04g050550.1.1	Tomato	cytosol	20.21	26.36
Solyc02g021280.1.1	Tomato	endoplasmic reticulum	25.68	25.96
Solyc02g068890.2.1	Tomato	mitochondrion	22.56	24.16
Solyc01g111470.2.1	Tomato	plastid	23.34	24.06
Solyc10g084080.1.1	Tomato	cytosol, extracellular	15.91	23.78
Solyc03g007390.2.1	Tomato	plastid	19.04	22.99
Solyc06g069700.2.1	Tomato	plastid	22.03	20.97
Solyc06g010270.1.1	Tomato	mitochondrion	10.56	17.49
Solyc10g084090.1.1	Tomato	cytosol	21.51	12.34

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990
UniProt:K4B356	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF280	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	EnsemblPlantsGene:Solyc01g108410.1	EnsemblPlants:Solyc01g108410.1.1	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002768250	SEG:seg	:	:	:

Description

Pentatricopeptide repeat-containing protein At5g39710 [Source:Projected from Arabidopsis thaliana (AT5G39710) UniProtKB/Swiss-Prot;Acc:Q9FIX3]

Coordinates

chr1:+:95743760..95746063

Molecular Weight (calculated)

86856.0 Da

IEP (calculated)

8.235

GRAVY (calculated)

-0.068

Length

767 amino acids

Sequence
(BLAST)

001: MLLVKPYRRA LHSSTRQVQC KTLDSPSPSS TTLFVDRAVS ILKGYDPISL DSISSQFTPQ YASSVLFQCR FDKPLVLRFI NWARNRQFFN LQCKCISIHI
101: LTRFKLYKTA QSLAEDVALK FGDNKGELVF SCLRDTYYSC KSSSAVFDLM VKSYSHLKMI DRAMNIFELA KFNGFMLTVL SYNSILDALI RVSYNGSFEL
201: AQKFYDDMVQ SGVSPNVYTY NIMIRGLCAK GELQKSLVVF NEMEKNGCLR NVVTYNTIIG GYCKIGKVDE AVKLLKLMQV RSLEPSVVTY NAIINGLCRE
301: GRMKETSEIL EEMRGKGLMP DEVTYNTLVN GYCREGNFHQ ALVLHSEMLR NGLSPDVVTY TSLINSMCKT GNLHRAMEFF DQLHARGLYP NDRTYTTLIV
401: GFSQQGLMNE AYKLLNEMIS NGFSPSIVTY NALINGHCAV GRMEDALRVT QEMEQRRLVP DVVTYSTIIS GFCRNCGLER AFCVKQQMVE KGVLPDVITY
501: SSLIQGLCEQ RRLTEAFELF QEMFRVGLQP DKFTYTTLIG AYCANGDIKG AFHLHNKMIY KGCFPDVVTY NVLINGLNKQ ARTREAKRLL FKLLYEQSVP
601: NCVTYDMLIE SCKDLELKSA LDLIKGFCMK GLLNEADQVF ELMLQKHKKP SEVAYSLLIH GHSRGGNLHR ALNLFREMAN LGFIPHTVSI IVLMKELFKE
701: GMSEELHQVI QSTLETCKLA DGELAKVIVE VNYKEGNMDA VFNALTEMAK DGLLPNSGKT AFCHMPQ

Best Arabidopsis Sequence Match ( AT5G39710.1 )
(BLAST)

001: MFLTKTLIRR SLSTFASSPS DSLLADKALT FLKRHPYQLH HLSANFTPEA ASNLLLKSQN DQALILKFLN WANPHQFFTL RCKCITLHIL TKFKLYKTAQ
101: ILAEDVAAKT LDDEYASLVF KSLQETYDLC YSTSSVFDLV VKSYSRLSLI DKALSIVHLA QAHGFMPGVL SYNAVLDATI RSKRNISFAE NVFKEMLESQ
201: VSPNVFTYNI LIRGFCFAGN IDVALTLFDK METKGCLPNV VTYNTLIDGY CKLRKIDDGF KLLRSMALKG LEPNLISYNV VINGLCREGR MKEVSFVLTE
301: MNRRGYSLDE VTYNTLIKGY CKEGNFHQAL VMHAEMLRHG LTPSVITYTS LIHSMCKAGN MNRAMEFLDQ MRVRGLCPNE RTYTTLVDGF SQKGYMNEAY
401: RVLREMNDNG FSPSVVTYNA LINGHCVTGK MEDAIAVLED MKEKGLSPDV VSYSTVLSGF CRSYDVDEAL RVKREMVEKG IKPDTITYSS LIQGFCEQRR
501: TKEACDLYEE MLRVGLPPDE FTYTALINAY CMEGDLEKAL QLHNEMVEKG VLPDVVTYSV LINGLNKQSR TREAKRLLLK LFYEESVPSD VTYHTLIENC
601: SNIEFKSVVS LIKGFCMKGM MTEADQVFES MLGKNHKPDG TAYNIMIHGH CRAGDIRKAY TLYKEMVKSG FLLHTVTVIA LVKALHKEGK VNELNSVIVH
701: VLRSCELSEA EQAKVLVEIN HREGNMDVVL DVLAEMAKDG FLPNGIS

Arabidopsis Description

EMB2745Pentatricopeptide repeat-containing protein At5g39710 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIX3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.