Factsheet for Solyc01g111470.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015805	Potato	endoplasmic reticulum, extracellular	77.02	93.78
PGSC0003DMT400015807	Potato	endoplasmic reticulum, extracellular	77.02	93.78
VIT_13s0019g03690.t01	Wine grape	cytosol	39.65	60.45
KRH34922	Soybean	cytosol	32.66	52.94
CDX71311	Canola	cytosol	47.18	50.21
Bra002000.1-P	Field mustard	cytosol	20.43	50.16
CDY31404	Canola	cytosol	49.46	49.66
AT2G16880.1	Thale cress	cytosol	48.12	48.18
GSMUA_Achr1P22450_001	Banana	mitochondrion	35.62	47.32
TraesCS4A01G045400.1	Wheat	plastid	41.94	41.66
KXG39937	Sorghum	cytosol, plastid	43.41	40.68
TraesCS4D01G259600.1	Wheat	cytosol	43.01	40.56
Zm00001d028107_P001	Maize	nucleus	38.44	40.06
Os03t0201400-02	Rice	cytosol	42.2	39.45
HORVU4Hr1G070310.1	Barley	plastid	43.41	38.64
Solyc11g011410.1.1	Tomato	cytosol	17.2	26.67
Solyc01g109060.2.1	Tomato	mitochondrion	21.91	26.38
Solyc04g050550.1.1	Tomato	cytosol	19.89	25.17
Solyc01g100450.1.1	Tomato	mitochondrion	20.43	25.12
Solyc05g008560.1.1	Tomato	mitochondrion	24.46	24.14
Solyc01g108410.1.1	Tomato	mitochondrion	24.06	23.34
Solyc02g021280.1.1	Tomato	endoplasmic reticulum	23.66	23.19
Solyc10g084080.1.1	Tomato	cytosol, extracellular	15.86	23.0
Solyc07g047620.1.1	Tomato	cytosol, mitochondrion	15.86	22.26
Solyc02g068890.2.1	Tomato	mitochondrion	21.1	21.93
Solyc03g007390.2.1	Tomato	plastid	18.28	21.42
Solyc06g010270.1.1	Tomato	mitochondrion	12.37	19.87
Solyc06g069700.2.1	Tomato	plastid	20.43	18.86
Solyc10g084090.1.1	Tomato	cytosol	21.91	12.19

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	UniProt:K4B409
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF325
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	EnsemblPlantsGene:Solyc01g111470.2	EnsemblPlants:Solyc01g111470.2.1	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0002767703	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:-:97692334..97696033

Molecular Weight (calculated)

84309.4 Da

IEP (calculated)

6.864

GRAVY (calculated)

-0.184

Length

744 amino acids

Sequence
(BLAST)

001: MSSSYPPLKP SQLVQTITTL LSSSPKSLPK CSLQSYLPHL TPPIIHSILS SPPLSSRPST LFSFFQWSQS HIPSFSTHPL PFPSLLPILS SLLSHRRFTV
101: ARSLLLTFIP SDHPQHLLHR HLLHPISNFP QPSTELLDTA IGAYCQCGKP HLALQIFKKM KRLRLCPNII TFNTLITALV RYPSTHSLFL CNELFNDALK
201: LGLVPTTITI NILIKVYCLA YKYKDANQLL DRMSEFGCVP DNVSYNTILD GLCEKGRLNE VRDLLLDMKG KGLVPNRNTY NILIHGYCKI GWLKDAAQIV
301: ELMTQNNTLP DVWTYNMLIG GLCNEGRIDD AIRIRDEMVG LKLLPDVKTY NTLINGCLDN KRSSEAFDLL EEMNQKGIKC NEITYNTLIK GYCKEGKMDK
401: AREVLQKMEE DGLCPDCVSY NTLISAYCKA GNLPEVLRIM KQIGEKGLKM DNFSLNTLLH ILCQERKLDE AYELLSVAST RGYLVDAVSY GTLIAGYFRC
501: ADTEKALKLW DEMEEREVIP TIVTYNIIIG GLCKSGKTQL AIAKLNELLE KGIVPDEITY NTIIHGYCWE GNIEKAFQFH NKMVENSFKP DVYTCNILLR
601: GLSREGMLEK AIKLFNTWID KGKTTDVVTY NTLITALCKD QRLDDALGLV AEMEEKNIQR DKYTHNAIVG ALTDAGRLKE AEEFMIDRER PSEQRLQMDD
701: REHELRVDEL ESSSIAYSQQ IDELCAEGRY KDAMLIYAQV TQRG

Best Arabidopsis Sequence Match ( AT2G16880.1 )
(BLAST)

001: MATLKPPESQ LLKTLTSILT SEKTHFLETL NPYIPQITQP LLTSLLSSPS LAKKPETLVS FFQWAQTSIP EAFPSDSPLP LISVVRSLLS HHKFADAKSL
101: LVSYIRTSDA SLSLCNSLLH PNLHLSPPPS KALFDIALSA YLHEGKPHVA LQIFQKMIRL KLKPNLLTCN TLLIGLVRYP SSFSISSARE VFDDMVKIGV
201: SLNVQTFNVL VNGYCLEGKL EDALGMLERM VSEFKVNPDN VTYNTILKAM SKKGRLSDLK ELLLDMKKNG LVPNRVTYNN LVYGYCKLGS LKEAFQIVEL
301: MKQTNVLPDL CTYNILINGL CNAGSMREGL ELMDAMKSLK LQPDVVTYNT LIDGCFELGL SLEARKLMEQ MENDGVKANQ VTHNISLKWL CKEEKREAVT
401: RKVKELVDMH GFSPDIVTYH TLIKAYLKVG DLSGALEMMR EMGQKGIKMN TITLNTILDA LCKERKLDEA HNLLNSAHKR GFIVDEVTYG TLIMGFFREE
501: KVEKALEMWD EMKKVKITPT VSTFNSLIGG LCHHGKTELA MEKFDELAES GLLPDDSTFN SIILGYCKEG RVEKAFEFYN ESIKHSFKPD NYTCNILLNG
601: LCKEGMTEKA LNFFNTLIEE REVDTVTYNT MISAFCKDKK LKEAYDLLSE MEEKGLEPDR FTYNSFISLL MEDGKLSETD ELLKKFSGKF GSMKRDLQVE
701: TEKNPATSES KEELNTEAIA YSDVIDELCS RGRLKEHSRS YTS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g16880 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.