Factsheet for Solyc10g084080.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 4
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027103	Potato	cytosol	73.49	92.18
KRH33556	Soybean	cytosol	18.91	46.41
HORVU2Hr1G019920.1	Barley	cytosol	32.75	44.92
GSMUA_Achr11P...	Banana	cytosol	39.18	40.94
EER99880	Sorghum	cytosol	36.84	39.54
VIT_08s0040g01530.t01	Wine grape	cytosol	46.98	38.87
HORVU2Hr1G019880.2	Barley	cytosol	25.73	36.67
Zm00001d007125_P001	Maize	endoplasmic reticulum, plastid	37.04	35.38
Zm00001d007129_P001	Maize	endoplasmic reticulum, plastid	36.26	34.64
Zm00001d007127_P001	Maize	endoplasmic reticulum, plastid	35.09	34.55
Os07t0671200-00	Rice	extracellular	37.04	34.48
TraesCS2A01G114800.1	Wheat	plastid	35.87	34.2
TraesCS2B01G133900.1	Wheat	plastid	35.67	34.01
KRG90304	Soybean	cytosol	35.28	32.26
Bra022891.1-P	Field mustard	plastid	38.01	31.76
CDX84733	Canola	plastid	38.01	31.76
CDX79463	Canola	plastid	38.01	31.6
TraesCS2D01G115600.1	Wheat	cytosol, plastid	35.48	31.11
AT2G32630.1	Thale cress	mitochondrion, plastid	37.04	30.45
Solyc11g011410.1.1	Tomato	cytosol	24.37	26.04
Solyc01g100450.1.1	Tomato	mitochondrion	25.93	21.98
KRG93154	Soybean	plastid	40.16	21.57
Solyc10g084090.1.1	Tomato	cytosol	55.95	21.47
Solyc04g050550.1.1	Tomato	cytosol	22.22	19.39
Solyc01g109060.2.1	Tomato	mitochondrion	22.81	18.93
Solyc02g068890.2.1	Tomato	mitochondrion	24.95	17.88
Solyc05g008560.1.1	Tomato	mitochondrion	26.12	17.77
Solyc02g021280.1.1	Tomato	endoplasmic reticulum	24.56	16.6
Solyc06g010270.1.1	Tomato	mitochondrion	14.62	16.2
Solyc07g047620.1.1	Tomato	cytosol, mitochondrion	16.57	16.04
Solyc01g108410.1.1	Tomato	mitochondrion	23.78	15.91
Solyc01g111470.2.1	Tomato	plastid	23.0	15.86
Solyc06g069700.2.1	Tomato	plastid	23.78	15.14
Solyc03g007390.2.1	Tomato	plastid	18.52	14.96

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	UniProt:K4D3J4
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF418	InterPro:Pentatricopeptide_repeat
SUPFAM:SSF81901	EnsemblPlantsGene:Solyc10g084080.1	EnsemblPlants:Solyc10g084080.1.1	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000276A0D1

Description

No Description!

Coordinates

chr10:+:63749185..63751555

Molecular Weight (calculated)

58176.8 Da

IEP (calculated)

8.246

GRAVY (calculated)

-0.268

Length

513 amino acids

Sequence
(BLAST)

001: MELVWCICYE KAKNDMLPCS SFFRQMVKFE VKFTVYSMTV VIDELCKMGE FHKARKFMDD KFVKPNSCSY KKLLNTCIKK PDFLIVKVIL RTMEKEGWDF
101: DPKSYTLLIK RYSNFGEFGE MKRLFMEIEE KGVKPDVYLY TSMISGYCKL GNVRKAYQLF DEMTKRGLVP DGHTYGALIN GLCKAGLMQE AEVLVNEMQS
201: KGIWINRAIF NTMMDGYCKQ GNVDEALRLQ RIMEDEGHEP DANAYNIIAT GLRKLDLHDV AKRLLLSMVD RGVAPNVLAY TSLIDIYCKQ GDFVQAKRTL
301: REMETKGIKP STGTYNALVD GYFKHGYFID AKRALIEIET KGVKPNTTTY TVLIDGYSKQ GDFVRAKKTL IEMENNGVKP NTNTYTALID GYCQKGMMNE
401: AYKLRNLMES KDLIANVYTY TSLVHGECKL GKVDDALKLL NEMPTKGLVP NVVTYTALIS GLSKEGRSGE AIRLYNQMIE AGVVPDAAAY SALSFLADNW
501: SSKGPLANDY HET

Best Arabidopsis Sequence Match ( AT2G32630.1 )
(BLAST)

001: MNMSSSSRKL SRLFNIVTQN QKSPVLLSSD QEAARRITAC LVEKSTIGKL QSNPSLLFNL NSNVTRLVLS EPTLPTQSCI DFFKLLREFE SNLKPDLTAV
101: VTLSHRLYSN RRFNEMRSLL NSVVNDGFYK RPVEELGSAM VDCDISEEKF EFFEKFFDLV FRVYVDNGMF EEGLRVFDYM VKKGLSIDER SCIVFLVAAK
201: KRRRIDLCLE IFRRMVDSGV KITVYSLTIV VEGLCRRGEV EKSKKLIKEF SVKGIKPEAY TYNTIINAYV KQRDFSGVEG VLKVMKKDGV VYNKVTYTLL
301: MELSVKNGKM SDAEKLFDEM RERGIESDVH VYTSLISWNC RKGNMKRAFL LFDELTEKGL SPSSYTYGAL IDGVCKVGEM GAAEILMNEM QSKGVNITQV
401: VFNTLIDGYC RKGMVDEASM IYDVMEQKGF QADVFTCNTI ASCFNRLKRY DEAKQWLFRM MEGGVKLSTV SYTNLIDVYC KEGNVEEAKR LFVEMSSKGV
501: QPNAITYNVM IYAYCKQGKI KEARKLRANM EANGMDPDSY TYTSLIHGEC IADNVDEAMR LFSEMGLKGL DQNSVTYTVM ISGLSKAGKS DEAFGLYDEM
601: KRKGYTIDNK VYTALIGSMH SPET

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g32630 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8P6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.