Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400027113 | Potato | cytosol, plastid | 69.33 | 91.78 |
| Solyc10g084080.1.1 | Tomato | cytosol, extracellular | 21.47 | 55.95 |
| VIT_08s0040g01530.t01 | Wine grape | cytosol | 25.28 | 54.52 |
| KRH33556 | Soybean | cytosol | 8.08 | 51.67 |
| HORVU2Hr1G019920.1 | Barley | cytosol | 13.69 | 48.93 |
| CDX84733 | Canola | plastid | 21.84 | 47.56 |
| Bra022891.1-P | Field mustard | plastid | 21.77 | 47.39 |
| GSMUA_Achr11P... | Banana | cytosol | 17.2 | 46.84 |
| CDX79463 | Canola | plastid | 21.62 | 46.84 |
| EER99880 | Sorghum | cytosol | 16.6 | 46.44 |
| KRG90304 | Soybean | cytosol | 19.22 | 45.81 |
| AT2G32630.1 | Thale cress | mitochondrion, plastid | 21.09 | 45.19 |
| Os07t0671200-00 | Rice | extracellular | 18.1 | 43.92 |
| Zm00001d007125_P001 | Maize | endoplasmic reticulum, plastid | 17.28 | 43.02 |
| TraesCS2B01G133900.1 | Wheat | plastid | 17.28 | 42.94 |
| TraesCS2A01G114800.1 | Wheat | plastid | 17.28 | 42.94 |
| Zm00001d007129_P001 | Maize | endoplasmic reticulum, plastid | 16.98 | 42.27 |
| Zm00001d007127_P001 | Maize | endoplasmic reticulum, plastid | 16.45 | 42.23 |
| HORVU2Hr1G019880.2 | Barley | cytosol | 11.22 | 41.67 |
| TraesCS2D01G115600.1 | Wheat | cytosol, plastid | 17.2 | 39.32 |
| KRG93154 | Soybean | plastid | 21.69 | 30.37 |
| Solyc11g011410.1.1 | Tomato | cytosol | 10.4 | 28.96 |
| Solyc06g010270.1.1 | Tomato | mitochondrion | 9.57 | 27.65 |
| Solyc01g100450.1.1 | Tomato | mitochondrion | 11.97 | 26.45 |
| Solyc01g109060.2.1 | Tomato | mitochondrion | 11.74 | 25.4 |
| Solyc04g050550.1.1 | Tomato | cytosol | 11.14 | 25.34 |
| Solyc07g047620.1.1 | Tomato | cytosol, mitochondrion | 8.83 | 22.26 |
| Solyc05g008560.1.1 | Tomato | mitochondrion | 12.42 | 22.02 |
| Solyc01g111470.2.1 | Tomato | plastid | 12.19 | 21.91 |
| Solyc01g108410.1.1 | Tomato | mitochondrion | 12.34 | 21.51 |
| Solyc02g068890.2.1 | Tomato | mitochondrion | 11.52 | 21.51 |
| Solyc02g021280.1.1 | Tomato | endoplasmic reticulum | 12.12 | 21.34 |
| Solyc03g007390.2.1 | Tomato | plastid | 8.9 | 18.74 |
| Solyc06g069700.2.1 | Tomato | plastid | 11.22 | 18.61 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0004519 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009451 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0043231 | GO:GO:0090305 | InterPro:IPR002885 | InterPro:IPR011990 | UniProt:K4D3J5 |
| PFAM:PF01535 | PFAM:PF13041 | PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF418 | InterPro:Pentatricopeptide_repeat |
| SUPFAM:SSF48452 | SUPFAM:SSF81901 | EnsemblPlantsGene:Solyc10g084090.1 | EnsemblPlants:Solyc10g084090.1.1 | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf |
| UniParc:UPI000276A0D2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr10:+:63753596..63759896
Molecular Weight (calculated)
150284.0 Da
IEP (calculated)
8.250
GRAVY (calculated)
-0.129
Length
1337 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSTQKFYQPI KQRFPNRPIK EIAKLISLFP PSHSTCSNFF NFKKNPNLET HLAVVVDLLK SKEFAEAENI LNAVVVTDGL RKPVSKIASL LSENYVKCKV
0101: IGKMFNMLFS VYVNNMRFSE ALQVFDYMKK WRFRIDDRAC MVYLLAMKRQ RQYDSLFEFF HKMVKFNVKI TVYSMTVVVD GLCKMGEVCE ARKLVDEMAS
0201: TGVKQSDYTY NILLQAYMKM QDFVAVKEIL RKMEKDGFDL NLTSYTLLIK GYSTFGDLVE VERLFKEIEE KGIEPNVHLF TSMISGYSKL GNVMKAFSTF
0301: VEMVERGLIP DGHTYGALIN GFCKAGLMQG AEVLLNEMQG KGISVDRVIF NTMMDGYCKQ GNVDEALRLQ TIMEGEGHQP DANAYNIIAT GLRKLELYDE
0401: AKSLLLSMVD RGVAPDTISY TTLIDIYCKQ GNFVEAKRAL IEMETKGIKP NTATYTTLVD GYCKLGKIVD AKRILRVMET AGVKPNTTTN SVCALIDGYC
0501: KQGNFIEAKT VFSEIGTKGV KPNTVTYTAL IDGYCKVRNP AKAEKVLVEM ETKGVKPTTV TYTALIDGCC KVGNIAKAIK VLIEMETKGV KPNTVTYTAL
0601: IDGCCKVGNI AKYTSLVHRE CKSGKVDDAL KLFNEMPTKG LVPNVVTYTA VISGLSKEGR SGEALRLYNQ MIEAGVIPDA AAYSALRDIL QKFGVPRLLL
0701: QILVLSTDIV CYKLKMFQEE FGPNFKLFQN YRKAKIQLTP SSPVTEETKR RRELDSVTGK NMSSFRSTKE IPPSLTSYLN PQVTHLVFSN PSVPTQSCLS
0801: FFKFLQKNQS FERPNLESHI ALCLRLFKAR KFAEAKSILH TVASDDSLRK PISEVASFLG ENHVEHKVMG KMFDMLFRVY VDSMRFKDAL EVFEYMKNGG
0901: FEIDDRSCMV YLLAMKRRKQ YDSLVEFFEM MVEFDVRITV YSMTMVIDGL CKVGEVSKAR KLMDEMVSKG VKPNVYTYNT LLDACMKKPD FVALKEILMA
1001: MEKEGLDLDV TSYTLLINGY CNIGNLKEVD RLFREIEGKG IEPDVHLYTS MISGCSKLGN VKKAFSVFDE MVERGLVPNA HTYGALINCL CKAGQMQAAE
1101: VLLDEMHSKG VDIGPVIFNT MMDGYCKQGN IDEAWRLQKI MEGKGYESDV YAYNIIATGL CKLDRCEEAK TWLFSMVDRG VAPNEVAHTT LISIYSKEGN
1201: FVEAKRTLGE METKGMKPNT ATYNTLMDGY CKKGMMKEAY KLKNVMECKG LKPDPYTYTS LVHGECISGK VDEALKLFNE MPREGIVPNV VTYTAMISGL
1301: SKEGRSDEAF RLYDEMIEAG LTPDASAYSA LVGSLHG
0101: IGKMFNMLFS VYVNNMRFSE ALQVFDYMKK WRFRIDDRAC MVYLLAMKRQ RQYDSLFEFF HKMVKFNVKI TVYSMTVVVD GLCKMGEVCE ARKLVDEMAS
0201: TGVKQSDYTY NILLQAYMKM QDFVAVKEIL RKMEKDGFDL NLTSYTLLIK GYSTFGDLVE VERLFKEIEE KGIEPNVHLF TSMISGYSKL GNVMKAFSTF
0301: VEMVERGLIP DGHTYGALIN GFCKAGLMQG AEVLLNEMQG KGISVDRVIF NTMMDGYCKQ GNVDEALRLQ TIMEGEGHQP DANAYNIIAT GLRKLELYDE
0401: AKSLLLSMVD RGVAPDTISY TTLIDIYCKQ GNFVEAKRAL IEMETKGIKP NTATYTTLVD GYCKLGKIVD AKRILRVMET AGVKPNTTTN SVCALIDGYC
0501: KQGNFIEAKT VFSEIGTKGV KPNTVTYTAL IDGYCKVRNP AKAEKVLVEM ETKGVKPTTV TYTALIDGCC KVGNIAKAIK VLIEMETKGV KPNTVTYTAL
0601: IDGCCKVGNI AKYTSLVHRE CKSGKVDDAL KLFNEMPTKG LVPNVVTYTA VISGLSKEGR SGEALRLYNQ MIEAGVIPDA AAYSALRDIL QKFGVPRLLL
0701: QILVLSTDIV CYKLKMFQEE FGPNFKLFQN YRKAKIQLTP SSPVTEETKR RRELDSVTGK NMSSFRSTKE IPPSLTSYLN PQVTHLVFSN PSVPTQSCLS
0801: FFKFLQKNQS FERPNLESHI ALCLRLFKAR KFAEAKSILH TVASDDSLRK PISEVASFLG ENHVEHKVMG KMFDMLFRVY VDSMRFKDAL EVFEYMKNGG
0901: FEIDDRSCMV YLLAMKRRKQ YDSLVEFFEM MVEFDVRITV YSMTMVIDGL CKVGEVSKAR KLMDEMVSKG VKPNVYTYNT LLDACMKKPD FVALKEILMA
1001: MEKEGLDLDV TSYTLLINGY CNIGNLKEVD RLFREIEGKG IEPDVHLYTS MISGCSKLGN VKKAFSVFDE MVERGLVPNA HTYGALINCL CKAGQMQAAE
1101: VLLDEMHSKG VDIGPVIFNT MMDGYCKQGN IDEAWRLQKI MEGKGYESDV YAYNIIATGL CKLDRCEEAK TWLFSMVDRG VAPNEVAHTT LISIYSKEGN
1201: FVEAKRTLGE METKGMKPNT ATYNTLMDGY CKKGMMKEAY KLKNVMECKG LKPDPYTYTS LVHGECISGK VDEALKLFNE MPREGIVPNV VTYTAMISGL
1301: SKEGRSDEAF RLYDEMIEAG LTPDASAYSA LVGSLHG
001: MNMSSSSRKL SRLFNIVTQN QKSPVLLSSD QEAARRITAC LVEKSTIGKL QSNPSLLFNL NSNVTRLVLS EPTLPTQSCI DFFKLLREFE SNLKPDLTAV
101: VTLSHRLYSN RRFNEMRSLL NSVVNDGFYK RPVEELGSAM VDCDISEEKF EFFEKFFDLV FRVYVDNGMF EEGLRVFDYM VKKGLSIDER SCIVFLVAAK
201: KRRRIDLCLE IFRRMVDSGV KITVYSLTIV VEGLCRRGEV EKSKKLIKEF SVKGIKPEAY TYNTIINAYV KQRDFSGVEG VLKVMKKDGV VYNKVTYTLL
301: MELSVKNGKM SDAEKLFDEM RERGIESDVH VYTSLISWNC RKGNMKRAFL LFDELTEKGL SPSSYTYGAL IDGVCKVGEM GAAEILMNEM QSKGVNITQV
401: VFNTLIDGYC RKGMVDEASM IYDVMEQKGF QADVFTCNTI ASCFNRLKRY DEAKQWLFRM MEGGVKLSTV SYTNLIDVYC KEGNVEEAKR LFVEMSSKGV
501: QPNAITYNVM IYAYCKQGKI KEARKLRANM EANGMDPDSY TYTSLIHGEC IADNVDEAMR LFSEMGLKGL DQNSVTYTVM ISGLSKAGKS DEAFGLYDEM
601: KRKGYTIDNK VYTALIGSMH SPET
101: VTLSHRLYSN RRFNEMRSLL NSVVNDGFYK RPVEELGSAM VDCDISEEKF EFFEKFFDLV FRVYVDNGMF EEGLRVFDYM VKKGLSIDER SCIVFLVAAK
201: KRRRIDLCLE IFRRMVDSGV KITVYSLTIV VEGLCRRGEV EKSKKLIKEF SVKGIKPEAY TYNTIINAYV KQRDFSGVEG VLKVMKKDGV VYNKVTYTLL
301: MELSVKNGKM SDAEKLFDEM RERGIESDVH VYTSLISWNC RKGNMKRAFL LFDELTEKGL SPSSYTYGAL IDGVCKVGEM GAAEILMNEM QSKGVNITQV
401: VFNTLIDGYC RKGMVDEASM IYDVMEQKGF QADVFTCNTI ASCFNRLKRY DEAKQWLFRM MEGGVKLSTV SYTNLIDVYC KEGNVEEAKR LFVEMSSKGV
501: QPNAITYNVM IYAYCKQGKI KEARKLRANM EANGMDPDSY TYTSLIHGEC IADNVDEAMR LFSEMGLKGL DQNSVTYTVM ISGLSKAGKS DEAFGLYDEM
601: KRKGYTIDNK VYTALIGSMH SPET
Arabidopsis Description
Pentatricopeptide repeat-containing protein At2g32630 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8P6]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.