Factsheet for Zm00001d007125_P001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid

Predictor Summary:

plastid 2
extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 2
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007129_P001	Maize	endoplasmic reticulum, plastid	97.95	97.95
Zm00001d007127_P001	Maize	endoplasmic reticulum, plastid	94.97	97.89
EER99880	Sorghum	cytosol	79.14	88.91
HORVU2Hr1G019920.1	Barley	cytosol	54.56	78.34
TraesCS2A01G114800.1	Wheat	plastid	78.03	77.88
TraesCS2B01G133900.1	Wheat	plastid	77.65	77.51
Os07t0671200-00	Rice	extracellular	76.91	74.95
TraesCS2D01G115600.1	Wheat	cytosol, plastid	78.03	71.62
HORVU2Hr1G019880.2	Barley	cytosol	43.95	65.56
GSMUA_Achr11P...	Banana	cytosol	50.28	54.99
PGSC0003DMT400027103	Potato	cytosol	31.28	41.08
KRH33556	Soybean	cytosol	15.83	40.67
VIT_08s0040g01530.t01	Wine grape	cytosol	45.62	39.52
Solyc10g084080.1.1	Tomato	cytosol, extracellular	35.38	37.04
KRG90304	Soybean	cytosol	37.43	35.83
CDX79463	Canola	plastid	39.11	34.04
CDX84733	Canola	plastid	38.73	33.88
Bra022891.1-P	Field mustard	plastid	38.73	33.88
AT2G32630.1	Thale cress	mitochondrion, plastid	38.73	33.33
Zm00001d039548_P001	Maize	mitochondrion	24.58	29.07
Zm00001d042911_P001	Maize	mitochondrion, plastid	21.79	28.54
Zm00001d003396_P001	Maize	endoplasmic reticulum, extracellular	23.65	26.24
Zm00001d003397_P001	Maize	endoplasmic reticulum, extracellular	23.65	26.24
Zm00001d003294_P001	Maize	plastid	25.33	25.95
KRG93154	Soybean	plastid	42.83	24.08
Zm00001d000093_P001	Maize	cytosol	23.09	23.44
Zm00001d018528_P001	Maize	cytosol	24.39	22.55
Zm00001d045319_P001	Maize	plastid	28.86	22.43
PGSC0003DMT400027113	Potato	cytosol, plastid	42.09	22.38
Zm00001d010121_P001	Maize	plastid	28.68	22.29
Zm00001d027800_P001	Maize	mitochondrion	26.82	22.19
Zm00001d023302_P001	Maize	mitochondrion	28.68	22.0
PGSC0003DMT400027098	Potato	cytosol	25.14	21.84
PGSC0003DMT400040701	Potato	mitochondrion	21.97	21.45
Zm00001d048880_P001	Maize	mitochondrion	26.82	21.3
Zm00001d020436_P001	Maize	mitochondrion	24.58	20.79
AT2G28050.1	Thale cress	cytosol, plastid	17.88	20.78
Zm00001d030479_P001	Maize	plastid	18.62	19.84
Zm00001d052540_P001	Maize	plastid	26.63	19.83
Zm00001d023422_P001	Maize	plastid	26.26	19.69
Zm00001d044707_P001	Maize	plastid	26.07	19.66
Solyc06g010270.1.1	Tomato	mitochondrion	16.95	19.65
Zm00001d009391_P001	Maize	cytosol	19.74	18.5
Zm00001d006478_P001	Maize	mitochondrion	25.14	18.12
Solyc10g084090.1.1	Tomato	cytosol	43.02	17.28
Zm00001d028107_P001	Maize	nucleus	21.97	16.53

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A1D6F440	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	ProteinID:ONM26095.1	PFAM:PF13041	PFAM:PF13432	PFAM:PF13812
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF418	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000842AF5D	EnsemblPlantsGene:Zm00001d007125	EnsemblPlants:Zm00001d007125_P001	EnsemblPlants:Zm00001d007125_T001	SEG:seg

Description

Pentatricopeptide repeat-containing protein

Coordinates

chr2:-:222819722..222821335

Molecular Weight (calculated)

58159.5 Da

IEP (calculated)

6.700

GRAVY (calculated)

0.030

Length

537 amino acids

Sequence
(BLAST)

001: MAGSAALPPL AAFASLLTAR RFAAARSALR SLLTPRLLAV PFADLAASSL PRGAPPHAVA AFHDMLFRAY ADAGAACRAA EALDAAVSRL GSLDPRSLTS
101: SLLSLRRAGR LADAAGLLER ALGSCPGSVS PLAASVVVDG LCKSGRVDDA RRLLDDMPRH GVSLNALCYN SLLDCYVRQK DDGRVQEILE IMENEGIEAT
201: VGTYTILVDS LSTARDISKV EALFNEMKAN NVVGDVYLYT AVINAYCRAG NMRRAAKVLD ECVGNGVEPN ERTYGVLING FCKIGQMEAA EMLLADMQGQ
301: GVGLNQIIFN TMIDGYCRKG MVDDALKIKA AMEKMGVELD IYTYNTLACG LCRVNRLDEA KTLLHIMIEM GVVPNYVTYT TLISIHCKDG DMVEARRLFR
401: EMAEKGATPS VVTYNVMIDG YTKKGSIREA ERFRKEMEKK GFVPDVYTYA SLVHGHCVNG KVDVALKLFE EMKQRGTEPN VVAYTALISG LAKEGRSEAA
501: FQLYDDMLKA GLIPDDSLYS ALVGSLHTDN RKDVKVS

Best Arabidopsis Sequence Match ( AT2G32630.1 )
(BLAST)

001: MNMSSSSRKL SRLFNIVTQN QKSPVLLSSD QEAARRITAC LVEKSTIGKL QSNPSLLFNL NSNVTRLVLS EPTLPTQSCI DFFKLLREFE SNLKPDLTAV
101: VTLSHRLYSN RRFNEMRSLL NSVVNDGFYK RPVEELGSAM VDCDISEEKF EFFEKFFDLV FRVYVDNGMF EEGLRVFDYM VKKGLSIDER SCIVFLVAAK
201: KRRRIDLCLE IFRRMVDSGV KITVYSLTIV VEGLCRRGEV EKSKKLIKEF SVKGIKPEAY TYNTIINAYV KQRDFSGVEG VLKVMKKDGV VYNKVTYTLL
301: MELSVKNGKM SDAEKLFDEM RERGIESDVH VYTSLISWNC RKGNMKRAFL LFDELTEKGL SPSSYTYGAL IDGVCKVGEM GAAEILMNEM QSKGVNITQV
401: VFNTLIDGYC RKGMVDEASM IYDVMEQKGF QADVFTCNTI ASCFNRLKRY DEAKQWLFRM MEGGVKLSTV SYTNLIDVYC KEGNVEEAKR LFVEMSSKGV
501: QPNAITYNVM IYAYCKQGKI KEARKLRANM EANGMDPDSY TYTSLIHGEC IADNVDEAMR LFSEMGLKGL DQNSVTYTVM ISGLSKAGKS DEAFGLYDEM
601: KRKGYTIDNK VYTALIGSMH SPET

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g32630 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8P6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.