Factsheet for Zm00001d003397_P001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	mitochondrion, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003396_P001	Maize	endoplasmic reticulum, extracellular	100.0	100.0
Os04t0463300-01	Rice	cytosol	11.16	77.14
EES10956	Sorghum	mitochondrion	90.5	71.34
TraesCS2A01G336700.1	Wheat	cytosol	74.17	58.95
TraesCS2D01G326200.1	Wheat	mitochondrion	72.93	57.96
TraesCS2B01G345200.1	Wheat	mitochondrion	72.11	57.31
HORVU2Hr1G080860.1	Barley	plastid	71.9	55.06
PGSC0003DMT400034430	Potato	cytosol	44.01	44.38
Solyc11g011410.1.1	Tomato	cytosol	43.59	43.96
KRH17313	Soybean	mitochondrion	41.74	42.35
GSMUA_Achr6P30640_001	Banana	mitochondrion, plastid	52.69	42.15
KRH72966	Soybean	mitochondrion	49.17	38.7
VIT_14s0006g00170.t01	Wine grape	mitochondrion	47.31	38.68
CDX93490	Canola	mitochondrion	44.21	35.67
Bra020001.1-P	Field mustard	mitochondrion	44.01	35.5
AT1G09680.1	Thale cress	mitochondrion	44.42	35.42
CDX94959	Canola	mitochondrion	43.39	34.54
Zm00001d039548_P001	Maize	mitochondrion	26.86	28.63
Zm00001d003294_P001	Maize	plastid	28.72	26.53
Zm00001d042911_P001	Maize	mitochondrion, plastid	21.69	25.61
Zm00001d007125_P001	Maize	endoplasmic reticulum, plastid	26.24	23.65
Zm00001d007129_P001	Maize	endoplasmic reticulum, plastid	25.41	22.91
Zm00001d007127_P001	Maize	endoplasmic reticulum, plastid	24.38	22.65
Zm00001d027800_P001	Maize	mitochondrion	29.55	22.03
Zm00001d018528_P001	Maize	cytosol	25.41	21.17
Zm00001d009391_P001	Maize	cytosol	25.0	21.12
Zm00001d000093_P001	Maize	cytosol	22.93	20.98
Zm00001d023302_P001	Maize	mitochondrion	30.17	20.86
Zm00001d045319_P001	Maize	plastid	29.34	20.55
Zm00001d010121_P001	Maize	plastid	29.34	20.55
Zm00001d030479_P001	Maize	plastid	19.83	19.05
Zm00001d006478_P001	Maize	mitochondrion	28.72	18.66
Zm00001d052540_P001	Maize	plastid	27.07	18.17
Zm00001d048880_P001	Maize	mitochondrion	25.21	18.05
Zm00001d020436_P001	Maize	mitochondrion	23.55	17.95
Zm00001d044707_P001	Maize	plastid	25.62	17.42
Zm00001d023422_P001	Maize	plastid	24.79	16.76
Zm00001d028107_P001	Maize	nucleus	24.59	16.67

Protein Annotations

EnsemblPlants:Zm00001d003397_P001	EnsemblPlants:Zm00001d003397_T001	EnsemblPlantsGene:Zm00001d003397	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF923	PFAM:PF13041	PFscan:PS51375	ProteinID:ONM16895.1	ProteinID:ONM16896.1	SEG:seg
SignalP:SignalP-noTM	TIGRFAMs:TIGR00756	UniParc:UPI0002210311	UniProt:A0A1D6E926	MapMan:35.1	:

Description

Putative pentatricopeptide repeat-containing protein

Coordinates

chr2:-:42805066..42806520

Molecular Weight (calculated)

53122.9 Da

IEP (calculated)

6.592

GRAVY (calculated)

-0.080

Length

484 amino acids

Sequence
(BLAST)

001: MSHLLIAHRL SHLALPLLRL LVSRLGRDSP PRLLPLLVSA ASTDDPAPLV SAVAKVYADE GLLPDGCSLL LLALRRGIRV PMPAWSDLMN RLPSVPEAYA
101: FYLHLLDAGV PPEARQFNML MRDMIRSGKL ASARNVFDEM LRRGVQPTVV TFNTLMSGMC KASDLNNANA LRGLMAKAGI APDVYTYGAF IQGLCKTGRI
201: QDAMEMFEEM CERGLNPNTV VLTTLIDAHC KEGDVTAGLE LRWEMATRGV KADLVAYNAL VNGFCRVRDM KAANDIVEEM RKDGLKPDKV TYTTLIDGCC
301: KEGELDTAME MKQEMSDEGV ALDDVTYTAL ISGLSKAGRS VDAERILCEM MEAGLQPDNT TYTMVIDAFC KNGDVKTGFK HLKEMQNKGK NPGIVTYNVV
401: MNGFCSLGQM KNADMLLNAM LNIGVCPNDI TYNILLDGHC KHGKVRDTEE LKSAKGMVSD FGVYTSLINE FVKKKSAKSY HDNG

Best Arabidopsis Sequence Match ( AT1G09680.1 )
(BLAST)

001: MFRIEILRCT LSQSHPQRFS RASFLLSTWY SQESVSAADN DDDPVLVKLS VAIRDSYKDP PLEFSSFTDC PSIRKVLPSL SVHHVVDLIN HNPLSLPQRS
101: IFAFFKFISS QPGFRFTVET YFVLARFLAV HEMFTEAQSL IELVVSRKGK NSASSVFISL VEMRVTPMCG FLVDALMITY TDLGFIPDAI QCFRLSRKHR
201: FDVPIRGCGN LLDRMMKLNP TGTIWGFYME ILDAGFPLNV YVFNILMNKF CKEGNISDAQ KVFDEITKRS LQPTVVSFNT LINGYCKVGN LDEGFRLKHQ
301: MEKSRTRPDV FTYSALINAL CKENKMDGAH GLFDEMCKRG LIPNDVIFTT LIHGHSRNGE IDLMKESYQK MLSKGLQPDI VLYNTLVNGF CKNGDLVAAR
401: NIVDGMIRRG LRPDKITYTT LIDGFCRGGD VETALEIRKE MDQNGIELDR VGFSALVCGM CKEGRVIDAE RALREMLRAG IKPDDVTYTM MMDAFCKKGD
501: AQTGFKLLKE MQSDGHVPSV VTYNVLLNGL CKLGQMKNAD MLLDAMLNIG VVPDDITYNT LLEGHHRHAN SSKRYIQKPE IGIVADLASY KSIVNELDRA
601: SKDHRNR

Arabidopsis Description

Putative pentatricopeptide repeat-containing protein At1g09680 [Source:UniProtKB/Swiss-Prot;Acc:O04491]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.