CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003397_P001	Maize	endoplasmic reticulum, extracellular	71.34	90.5
Zm00001d003396_P001	Maize	endoplasmic reticulum, extracellular	71.34	90.5
Os04t0463300-01	Rice	cytosol	8.96	78.57
TraesCS2A01G336700.1	Wheat	cytosol	73.45	74.06
TraesCS2D01G326200.1	Wheat	mitochondrion	73.29	73.89
TraesCS2B01G345200.1	Wheat	mitochondrion	72.96	73.56
HORVU2Hr1G080860.1	Barley	plastid	71.99	69.94
GSMUA_Achr6P30640_001	Banana	mitochondrion, plastid	50.0	50.74
VIT_14s0006g00170.t01	Wine grape	mitochondrion	42.51	44.09
KRH72966	Soybean	mitochondrion	43.81	43.74
KRH17313	Soybean	mitochondrion	33.88	43.61
PGSC0003DMT400034430	Potato	cytosol	33.71	43.12
Solyc11g011410.1.1	Tomato	cytosol	33.39	42.71
Bra020001.1-P	Field mustard	mitochondrion	40.07	41.0
CDX93490	Canola	mitochondrion	40.07	41.0
CDX94959	Canola	mitochondrion	40.07	40.46
AT1G09680.1	Thale cress	mitochondrion	38.11	38.55
OQU81794	Sorghum	mitochondrion, peroxisome	19.71	30.02
KXG31660	Sorghum	mitochondrion	15.8	28.36
EER99880	Sorghum	cytosol	21.17	27.2
OQU87837	Sorghum	plastid	16.78	25.12
OQU90004	Sorghum	cytosol	19.22	24.84
OQU83816	Sorghum	mitochondrion	17.59	24.32
KXG40115	Sorghum	cytosol	16.78	23.84
OQU75844	Sorghum	cytosol	20.68	23.05
EES07796	Sorghum	cytosol, endoplasmic reticulum, extracellular	22.15	22.67
EES00885	Sorghum	cytosol, mitochondrion	20.85	22.34
EES09272	Sorghum	plastid	24.43	20.63
KXG39937	Sorghum	cytosol, plastid	26.55	20.53
KXG22891	Sorghum	mitochondrion	18.57	19.49
OQU78719	Sorghum	cytosol	23.29	18.72
EER96725	Sorghum	mitochondrion, plastid	19.06	18.37

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:8073444	UniProt:C5Y9W9	EnsemblPlants:EES10956	ProteinID:EES10956
ProteinID:EES10956.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451
GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF923
InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3006G108900	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A86EB3	RefSeq:XP_002446628.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:47819885..47822128

Molecular Weight (calculated)

66987.2 Da

IEP (calculated)

8.339

GRAVY (calculated)

-0.034

Length

614 amino acids

Sequence
(BLAST)

001: MHRGRALRPR PIQRRPPPAS EPAPPVSPPW YAAPRSTLPP PHPPAGEADP LLVAASEVAL GLPVHPAPLP AAAPAPLLRL LPAFTSAHFL SLLRRNPLAL
101: QPLPLLSLFR VLLASPPGLF RHTPASFLSM SHLLIAHRLP HLALPLLRLL VSRLGRDSPP RLLPLLLSAV STDDPAPLVS AVAKAYADEG LLPDGCSLLL
201: LLALRRGVRV PLPAWSDLMN RLPSVPEAYA FYLQLLDAGV PPEAKQFNML MRDMIRSGKL ASARNMFDEM LRRGVPPTVV TFNTLMSGMC KASDLNSANA
301: LRGLMAKAGV APDVYTYGAF MQGLCKAGRI QDAVEMFEEM RERGVNPNTV VFTTLIDAHC KEGNVAAGLE LHREMATRGI KTDLVAYNAL ANGLCRVRDL
401: KAANDIVEEM RNNGLKPDKV TYTTLIDGFC KEGELDMAME MKQEMSDEGV ALDEVTYTTL ISGLSKSGRS VDSERILCEM MEAGLEPDNT TYTMVIDAFC
501: KNSDVKTGFK LLKEMQNKGR KPGVVTYNVV MNGFCILGQM KNADMLLNAM LNIGVCPDDI TYNILLDGHC KHGKVRDAEE LKSAKGMVSD FGLYTSLINE
601: FVKKKSTKSY HDNG

Best Arabidopsis Sequence Match ( AT1G09680.1 )
(BLAST)

001: MFRIEILRCT LSQSHPQRFS RASFLLSTWY SQESVSAADN DDDPVLVKLS VAIRDSYKDP PLEFSSFTDC PSIRKVLPSL SVHHVVDLIN HNPLSLPQRS
101: IFAFFKFISS QPGFRFTVET YFVLARFLAV HEMFTEAQSL IELVVSRKGK NSASSVFISL VEMRVTPMCG FLVDALMITY TDLGFIPDAI QCFRLSRKHR
201: FDVPIRGCGN LLDRMMKLNP TGTIWGFYME ILDAGFPLNV YVFNILMNKF CKEGNISDAQ KVFDEITKRS LQPTVVSFNT LINGYCKVGN LDEGFRLKHQ
301: MEKSRTRPDV FTYSALINAL CKENKMDGAH GLFDEMCKRG LIPNDVIFTT LIHGHSRNGE IDLMKESYQK MLSKGLQPDI VLYNTLVNGF CKNGDLVAAR
401: NIVDGMIRRG LRPDKITYTT LIDGFCRGGD VETALEIRKE MDQNGIELDR VGFSALVCGM CKEGRVIDAE RALREMLRAG IKPDDVTYTM MMDAFCKKGD
501: AQTGFKLLKE MQSDGHVPSV VTYNVLLNGL CKLGQMKNAD MLLDAMLNIG VVPDDITYNT LLEGHHRHAN SSKRYIQKPE IGIVADLASY KSIVNELDRA
601: SKDHRNR

Arabidopsis Description

Putative pentatricopeptide repeat-containing protein At1g09680 [Source:UniProtKB/Swiss-Prot;Acc:O04491]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.