CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome

Predictor Summary:

plastid 1
mitochondrion 4
peroxisome 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003294_P001	Maize	plastid	94.04	72.33
Os04t0477200-01	Rice	endoplasmic reticulum	80.65	71.43
HORVU2Hr1G082620.1	Barley	plastid	79.4	63.24
TraesCS2D01G336100.1	Wheat	plastid	79.65	61.26
GSMUA_Achr8P16100_001	Banana	cytosol	41.44	61.17
TraesCS2B01G355200.1	Wheat	plastid	79.4	61.07
TraesCS2A01G326700.1	Wheat	plastid	78.66	60.5
VIT_12s0055g00970.t01	Wine grape	plastid	53.85	34.23
KRH24548	Soybean	mitochondrion	51.86	33.55
Solyc01g109060.2.1	Tomato	mitochondrion	48.64	31.72
PGSC0003DMT400066731	Potato	mitochondrion, plastid	48.14	31.39
CDY36644	Canola	mitochondrion	48.14	30.65
CDX71231	Canola	mitochondrion	47.89	30.59
Bra015229.1-P	Field mustard	mitochondrion	47.89	30.49
AT2G15630.1	Thale cress	mitochondrion	46.9	30.14
OQU87837	Sorghum	plastid	30.02	29.51
KRH29553	Soybean	mitochondrion	31.51	29.0
KXG40115	Sorghum	cytosol	28.04	26.16
OQU75844	Sorghum	cytosol	35.48	25.95
OQU90004	Sorghum	cytosol	30.52	25.89
EER99880	Sorghum	cytosol	29.78	25.1
KXG31660	Sorghum	mitochondrion	20.6	24.27
EES10956	Sorghum	mitochondrion	30.02	19.71
EES07796	Sorghum	cytosol, endoplasmic reticulum, extracellular	28.78	19.33
EER96725	Sorghum	mitochondrion, plastid	28.04	17.74
KXG39937	Sorghum	cytosol, plastid	33.25	16.88
EES09272	Sorghum	plastid	29.78	16.51
EES00885	Sorghum	cytosol, mitochondrion	22.83	16.06
OQU78719	Sorghum	cytosol	30.02	15.84
OQU83816	Sorghum	mitochondrion	16.63	15.09
KXG22891	Sorghum	mitochondrion	20.1	13.85

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A1Z5RDG1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	InterPro:IPR002885
InterPro:IPR011990	EnsemblPlants:OQU81794	ProteinID:OQU81794	ProteinID:OQU81794.1	PFAM:PF01535	PFAM:PF13041
PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF918	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3006G120200
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000B8BAC91	:	:

Description

hypothetical protein

Coordinates

chr6:-:48687469..48690818

Molecular Weight (calculated)

44794.4 Da

IEP (calculated)

6.756

GRAVY (calculated)

-0.214

Length

403 amino acids

Sequence
(BLAST)

001: MLRHLCATGK PVRALELLRQ MPRPNAVTYN TVIAGFCARG RVQAALEVMR EMRERGGIAP DKYTYATLIS GWCKIGRMED AAKVFDEMLT QGEVAPSAVM
101: YNALIGGYCD RGKLDVALQY REDMVQRGVA MTVATYNLLV HALFMDGRAS DAYAVLEEMQ RNGLSPDVFT YNILINGYCK EGNEKKALEV FEEMSRKGVR
201: ATAVTYTSLI YAFSRKGQVQ ETDRLFKVAV KKGIRPDVVM YNALINSHCA GGDMERAFEI MAEMEKKRIP PDDVTYNTLI RGFCLLGRLD EARGLIDEMT
301: KRGIQPDLVS YNTLISGYSM KGDIKDALRV RDKMMDKGFN PTLLTYNALI QGLCKNGQGD DAENLMKEMV GKGITPDDST YISLIEGLTT VDEQMSAADA
401: AKA

Best Arabidopsis Sequence Match ( AT2G15630.1 )
(BLAST)

001: MRRFTVPCIL RHRISILSGA GYSPAAARLS SLAQTSTPES VLPPITSEIL LESIRSSQWH IVEHVADKLT PSLVSTTLLS LVKTPNLAFN FVNHIDLYRL
101: DFQTQCLAIA VISKLSSPKP VTQLLKEVVT SRKNSIRNLF DELVLAHDRL ETKSTILFDL LVRCCCQLRM VDEAIECFYL MKEKGFYPKT ETCNHILTLL
201: SRLNRIENAW VFYADMYRME IKSNVYTFNI MINVLCKEGK LKKAKGFLGI MEVFGIKPTI VTYNTLVQGF SLRGRIEGAR LIISEMKSKG FQPDMQTYNP
301: ILSWMCNEGR ASEVLREMKE IGLVPDSVSY NILIRGCSNN GDLEMAFAYR DEMVKQGMVP TFYTYNTLIH GLFMENKIEA AEILIREIRE KGIVLDSVTY
401: NILINGYCQH GDAKKAFALH DEMMTDGIQP TQFTYTSLIY VLCRKNKTRE ADELFEKVVG KGMKPDLVMM NTLMDGHCAI GNMDRAFSLL KEMDMMSINP
501: DDVTYNCLMR GLCGEGKFEE ARELMGEMKR RGIKPDHISY NTLISGYSKK GDTKHAFMVR DEMLSLGFNP TLLTYNALLK GLSKNQEGEL AEELLREMKS
601: EGIVPNDSSF CSVIEAMSNL DAKKSDS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g15630, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQF1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.