CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29553	Soybean	mitochondrion	63.56	90.41
VIT_12s0055g00970.t01	Wine grape	plastid	65.49	64.35
GSMUA_Achr8P16100_001	Banana	cytosol	26.81	61.17
Solyc01g109060.2.1	Tomato	mitochondrion	58.75	59.22
PGSC0003DMT400066731	Potato	mitochondrion, plastid	58.27	58.74
AT2G15630.1	Thale cress	mitochondrion	54.9	54.55
Bra015229.1-P	Field mustard	mitochondrion	54.9	54.03
CDY36644	Canola	mitochondrion	54.9	54.03
CDX71231	Canola	mitochondrion	54.09	53.41
OQU81794	Sorghum	mitochondrion, peroxisome	33.55	51.86
Os04t0477200-01	Rice	endoplasmic reticulum	35.15	48.13
HORVU2Hr1G082620.1	Barley	plastid	37.08	45.65
TraesCS2A01G326700.1	Wheat	plastid	38.36	45.61
TraesCS2D01G336100.1	Wheat	plastid	38.04	45.23
TraesCS2B01G355200.1	Wheat	plastid	37.88	45.04
Zm00001d003294_P001	Maize	plastid	37.08	44.08
KRH29211	Soybean	cytosol	28.73	30.7
KRH17313	Soybean	mitochondrion	22.47	29.35
KRH50360	Soybean	cytosol, extracellular, plastid	25.84	28.96
KRH51875	Soybean	cytosol	26.0	28.52
KRH51037	Soybean	endoplasmic reticulum, extracellular, plastid	21.03	28.23
KRH02112	Soybean	extracellular, mitochondrion	24.4	28.04
KRH14574	Soybean	plastid	28.73	27.97
KRH72966	Soybean	mitochondrion	27.45	27.8
KRG99196	Soybean	cytosol	22.79	26.89
KRH44246	Soybean	cytosol	21.03	26.25
KRH33556	Soybean	cytosol	8.67	25.84
KRH54581	Soybean	mitochondrion	21.67	25.38
KRH58559	Soybean	plastid	23.6	25.09
KRH16451	Soybean	plastid	27.45	24.89
KRH20741	Soybean	cytosol	22.79	24.19
KRH18049	Soybean	plastid	26.65	24.16
KRH45820	Soybean	cytosol, mitochondrion, plastid	28.73	24.12
KRH34922	Soybean	cytosol	17.66	23.97
KRH56553	Soybean	plastid	24.08	23.96
KRH13392	Soybean	cytosol	22.47	23.85
KRH42458	Soybean	plastid	28.41	23.57
KRG90304	Soybean	cytosol	20.87	23.17
KRG89236	Soybean	plastid	28.89	23.14
KRH40170	Soybean	mitochondrion	22.95	20.63
KRH49758	Soybean	plastid	22.63	20.03
KRG93154	Soybean	plastid	23.76	15.5

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100791654	MapMan:35.1	EMBL:ACUP02007178	EnsemblPlantsGene:GLYMA_12G048300	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	UniProt:K7LT27	EnsemblPlants:KRH24548	ProteinID:KRH24548	ProteinID:KRH24548.1
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF918
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000233D761	SEG:seg

Description

hypothetical protein

Coordinates

chr12:+:3491917..3494371

Molecular Weight (calculated)

70715.3 Da

IEP (calculated)

7.346

GRAVY (calculated)

-0.186

Length

623 amino acids

Sequence
(BLAST)

001: MKFLKIFNSK PFKLRTFNSL SHSQTPPFSI PTTLTESTLL HSIESSQWHF IEQVAPHLTP SLLSSTLTTL RHNPQLVLHL LSHLQNHPHS LDLATSSLAI
101: CVLYRLPSPK PSINLIQRLI LSPTCTNRTI FDELALARDR VDAKTTLIFD LLVRAYCELK KPNEALECFY LIKEKGFVPN IETCNQMLSL FLKLNRTQMA
201: WVLYAEMFRM NIRSSLYTFN IMINVLCKEG KLKKAKEFIG HMETLGVKPN VVTYNTIIHG HCLRGKFQRA RVIFQTMKDK GLEPDCYTYN SFISGLCKEG
301: RLEEASGLIC KMLEGGLVPN AVTYNALIDG YCNKGDLDKA YAYRDEMISK GIMASLVTYN LFIHALFMEG RMGDADNMIK EMREKGMMPD AVTHNILING
401: YCRCGDAKRA FGLLDEMVGK GIQPTLVTYT SLIYVLGKRN RMKEADALFS KIQQEGLLPD IIVFNALIDG HCANGNIDRA FQLLKEMDNM KVLPDEITYN
501: TLMQGYCREG KVEEARQLLD EMKRRGIKPD HISYNTLISG YSKRGDMKDA FRVRDEMMTT GFDPTILTYN ALIQGLCKNQ EGEHAEELLK EMVSKGITPD
601: DSTYLSIIEA METVDDLEGN DDK

Best Arabidopsis Sequence Match ( AT2G15630.1 )
(BLAST)

001: MRRFTVPCIL RHRISILSGA GYSPAAARLS SLAQTSTPES VLPPITSEIL LESIRSSQWH IVEHVADKLT PSLVSTTLLS LVKTPNLAFN FVNHIDLYRL
101: DFQTQCLAIA VISKLSSPKP VTQLLKEVVT SRKNSIRNLF DELVLAHDRL ETKSTILFDL LVRCCCQLRM VDEAIECFYL MKEKGFYPKT ETCNHILTLL
201: SRLNRIENAW VFYADMYRME IKSNVYTFNI MINVLCKEGK LKKAKGFLGI MEVFGIKPTI VTYNTLVQGF SLRGRIEGAR LIISEMKSKG FQPDMQTYNP
301: ILSWMCNEGR ASEVLREMKE IGLVPDSVSY NILIRGCSNN GDLEMAFAYR DEMVKQGMVP TFYTYNTLIH GLFMENKIEA AEILIREIRE KGIVLDSVTY
401: NILINGYCQH GDAKKAFALH DEMMTDGIQP TQFTYTSLIY VLCRKNKTRE ADELFEKVVG KGMKPDLVMM NTLMDGHCAI GNMDRAFSLL KEMDMMSINP
501: DDVTYNCLMR GLCGEGKFEE ARELMGEMKR RGIKPDHISY NTLISGYSKK GDTKHAFMVR DEMLSLGFNP TLLTYNALLK GLSKNQEGEL AEELLREMKS
601: EGIVPNDSSF CSVIEAMSNL DAKKSDS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g15630, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQF1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.