CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20741	Soybean	cytosol	93.36	93.36
VIT_14s0083g00550.t01	Wine grape	cytosol	64.4	64.07
Solyc04g050550.1.1	Tomato	cytosol	58.26	58.16
AT5G38730.1	Thale cress	cytosol	56.39	55.54
Bra028204.1-P	Field mustard	cytosol	55.88	55.31
CDX74507	Canola	cytosol	55.88	55.31
CDY67116	Canola	cytosol	55.88	55.31
GSMUA_Achr1P17710_001	Banana	cytosol	49.06	47.14
Os02t0827900-03	Rice	plastid	43.44	43.97
Zm00001d018528_P001	Maize	cytosol	42.25	42.69
EES07796	Sorghum	cytosol, endoplasmic reticulum, extracellular	43.27	42.33
TraesCS6D01G355100.1	Wheat	plastid	40.37	39.7
TraesCS6A01G371200.1	Wheat	plastid	40.2	39.53
TraesCS6B01G408200.1	Wheat	plastid	40.03	39.36
HORVU6Hr1G087430.7	Barley	cytosol	39.86	37.93
KRH17313	Soybean	mitochondrion	21.98	27.04
KRH72966	Soybean	mitochondrion	27.43	26.18
KRH44246	Soybean	cytosol	21.29	25.05
KRH29211	Soybean	cytosol	23.85	24.01
KRH24548	Soybean	mitochondrion	23.85	22.47
KRH16451	Soybean	plastid	25.72	21.98
KRH02112	Soybean	extracellular, mitochondrion	20.1	21.77
KRH50360	Soybean	cytosol, extracellular, plastid	20.44	21.58
KRH54581	Soybean	mitochondrion	19.42	21.43
KRH18049	Soybean	plastid	25.04	21.4
KRH51875	Soybean	cytosol	20.44	21.13
KRG99196	Soybean	cytosol	18.57	20.64
KRH51037	Soybean	endoplasmic reticulum, extracellular, plastid	16.18	20.47
KRH14574	Soybean	plastid	22.32	20.47
KRH34922	Soybean	cytosol	15.84	20.26
KRH56553	Soybean	plastid	21.47	20.13
KRG90304	Soybean	cytosol	19.08	19.96
KRH42458	Soybean	plastid	25.38	19.84
KRH33556	Soybean	cytosol	6.98	19.62
KRH58559	Soybean	plastid	19.25	19.28
KRH40170	Soybean	mitochondrion	22.66	19.19
KRG89236	Soybean	plastid	24.87	18.77
KRH45820	Soybean	cytosol, mitochondrion, plastid	23.51	18.6
KRH29553	Soybean	mitochondrion	13.63	18.26
KRH49758	Soybean	plastid	20.44	17.05
KRG93154	Soybean	plastid	21.29	13.09

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100804589	MapMan:35.1	EMBL:ACUP02009716	EnsemblPlantsGene:GLYMA_15G236300	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
UniProt:I1MIS0	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KRH13392	ProteinID:KRH13392	ProteinID:KRH13392.1
ProteinID:KRH13393.1	PFAM:PF01535	PFAM:PF13041	PFAM:PF17177	InterPro:PPR_long	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF279	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI000233BB5B	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:44491842..44497509

Molecular Weight (calculated)

67181.9 Da

IEP (calculated)

8.712

GRAVY (calculated)

-0.139

Length

587 amino acids

Sequence
(BLAST)

001: MVLIGSHNQF VDSVCSIVVK GHWGNLLKVK NASALTSSTI HKVLLQLSLY GYGLSHSFPF FKWLDSIPHY SHSLQCSWAM IHILTEHKHF KTAQHVLEKI
101: AHKDFLSSPS VLSTLVRTHD NQEVNSQVLS WLVIHYAKSK MTQDAIQVFE QMRLHEVKPH LHACTVLLNS LLKDGVTHMV WKIYKRMVQV GVVPNIYIYN
201: CLFHACSKSG DVERAEQLLN EMDVKGVLQD IFTYNTLLSL YCKKGMHYEA LSIQNRMERE GINLDIVSYN SLIYGFCKEG RMREAMRMFS EIKNATPNHV
301: TYTTLIDGYC KTNELEEALK MCKLMEAKGL YPGVVTYNSI LRKLCQDGRI RDANKLLNEM SERKLQADNI TCNTLINAYC KIGDLKSALK FKNKMLEAGL
401: KPDPFTYKAL IHGFCKTNEL ESAKELMFSM LDAGFTPSYC TYSWIVDGYN KKDNMDAVLA LPDEFLSRGI CLDVSVYRAL IRSSCKVERI QCAERLFYHM
501: EGKGISGESV IYTSIAYAYW NVGNVSAASS MLEEMARRRL MITVKLYRCF STSDANENKV SQIFWNHVMD RGLMSRNTMN KIQQKLI

Best Arabidopsis Sequence Match ( AT5G38730.1 )
(BLAST)

001: MVNLLSANRE ALIAQSICAT VLKGNWKNIL KHKVDSGLLK SAITTQVISE LSLFSGYGGP SLSWSFFIWT DSLPSSKHSL QSSWKMILIL TKHKHFKTAH
101: QLLDKLAQRE LLSSPLVLRS LVGGVSEDPE DVSHVFSWLM IYYAKAGMIN DSIVVFEQIR SCGLKPHLQA CTVLLNSLVK QRLTDTVWKI FKKMVKLGVV
201: ANIHVYNVLV HACSKSGDPE KAEKLLSEME EKGVFPDIFT YNTLISVYCK KSMHFEALSV QDRMERSGVA PNIVTYNSFI HGFSREGRMR EATRLFREIK
301: DDVTANHVTY TTLIDGYCRM NDIDEALRLR EVMESRGFSP GVVTYNSILR KLCEDGRIRE ANRLLTEMSG KKIEPDNITC NTLINAYCKI EDMVSAVKVK
401: KKMIESGLKL DMYSYKALIH GFCKVLELEN AKEELFSMIE KGFSPGYATY SWLVDGFYNQ NKQDEITKLL EEFEKRGLCA DVALYRGLIR RICKLEQVDY
501: AKVLFESMEK KGLVGDSVIF TTMAYAYWRT GKVTEASALF DVMYNRRLMV NLKLYKSISA SYAGDNDVLR FFWSHVGDRC LISKSILREM NRSEVL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g38730 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKR3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.