CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18049	Soybean	plastid	93.6	93.6
VIT_01s0011g04390.t01	Wine grape	plastid	62.88	60.17
PGSC0003DMT400078379	Potato	cytosol	56.04	55.64
Bra024554.1-P	Field mustard	cytosol	26.64	54.14
Solyc05g008560.1.1	Tomato	mitochondrion	57.35	52.25
CDY21405	Canola	cytosol	32.02	52.01
Bra024552.1-P	Field mustard	cytosol	18.92	51.59
CDY04764	Canola	cytosol	26.49	51.41
CDY04754	Canola	cytosol	17.03	48.35
Zm00001d000093_P001	Maize	cytosol	36.68	47.64
GSMUA_Achr6P35510_001	Banana	cytosol	47.89	46.93
AT1G22960.1	Thale cress	mitochondrion	46.87	44.85
Os12t0152600-01	Rice	plastid	44.1	42.32
Zm00001d044707_P001	Maize	plastid	43.52	41.99
EES09272	Sorghum	plastid	44.25	41.82
Zm00001d023422_P001	Maize	plastid	43.09	41.34
HORVU5Hr1G042300.1	Barley	plastid	42.21	40.67
TraesCS5B01G127400.1	Wheat	plastid	39.59	40.48
TraesCS5A01G128400.1	Wheat	plastid	39.59	40.48
Zm00001d052540_P001	Maize	plastid	42.07	40.08
TraesCS5D01G136000.1	Wheat	plastid	39.16	40.03
CDY04753	Canola	mitochondrion, plastid	24.16	39.9
OQU78719	Sorghum	cytosol	43.38	39.01
KRG99196	Soybean	cytosol	23.0	29.92
KRH14574	Soybean	plastid	26.64	28.59
KRH29211	Soybean	cytosol	24.02	28.3
KRH24548	Soybean	mitochondrion	24.89	27.45
KRH50360	Soybean	cytosol, extracellular, plastid	22.13	27.34
KRH34922	Soybean	cytosol	17.9	26.8
KRH51875	Soybean	cytosol	22.13	26.76
KRH02112	Soybean	extracellular, mitochondrion	21.11	26.75
KRH45820	Soybean	cytosol, mitochondrion, plastid	28.82	26.68
KRH17313	Soybean	mitochondrion	18.49	26.62
KRH54581	Soybean	mitochondrion	20.23	26.13
KRG89236	Soybean	plastid	29.4	25.96
KRH33556	Soybean	cytosol	7.86	25.84
KRH13392	Soybean	cytosol	21.98	25.72
KRH20741	Soybean	cytosol	21.54	25.21
KRH72966	Soybean	mitochondrion	22.42	25.04
KRH51037	Soybean	endoplasmic reticulum, extracellular, plastid	16.74	24.78
KRH29553	Soybean	mitochondrion	15.57	24.43
KRH42458	Soybean	plastid	26.64	24.37
KRG90304	Soybean	cytosol	19.8	24.24
KRH56553	Soybean	plastid	20.82	22.84
KRH58559	Soybean	plastid	19.21	22.53
KRH40170	Soybean	mitochondrion	22.71	22.51
KRH44246	Soybean	cytosol	16.3	22.44
KRH49758	Soybean	plastid	22.13	21.59
KRG93154	Soybean	plastid	23.58	16.96

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EMBL:ACUP02008888	EnsemblPlantsGene:GLYMA_14G156100	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	UniProt:I1MA86
InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KRH16451	ProteinID:KRH16451	ProteinID:KRH16451.1	PFAM:PF01535
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF724	InterPro:Pentatricopeptide_repeat
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00023D34BD	SEG:seg	:

Description

hypothetical protein

Coordinates

chr14:-:33982153..33989444

Molecular Weight (calculated)

78138.3 Da

IEP (calculated)

9.053

GRAVY (calculated)

0.023

Length

687 amino acids

Sequence
(BLAST)

001: MTLSVRASSK PFITLNEARF LFPFSFFSSS TVQYTNKFLF HAAVAEPQLL VRVLNTVRHR PAVALRFFRW AERQTGFKRS ELTYAVILDI LARNGLMRSA
101: YCVMEKVVSV KMENGVVDVV SSSEASMSSV KLILDLLLWI YAKKSMLEKC LLVFYKMVSK GMLPDLKNCN RVLRLLRDRD SSIDVAREVY NVMVECGIRP
201: TVVTYNTMLD SFCKQGKVQE ALQLLLQMQK MGCLPNDVTY NVLVNGLSHS GELEQAKELI QEMLRLGLEV SAYTYDPLIR GYCEKGQLDE ASRLGEEMLS
301: RGAVPTLVTY NTIMYGLCKW GRVSDARKLL DVMVNKNLMP DLVSYNTLIY GYTRLGNIGE AFLLFAELRF RGLVPSVVTY NTLIDGLCRM GDLDVAMRLK
401: DEMIKHGPDP DVFTFTILVR GFCKLGNLPM AKELFDEMLN RGLQPDRFAY ITRIVGELKL GDPSKAFGMQ EEMLARGFPP DLITYNVFID GLHKLGNLKE
501: ASELVKKMLY NGLVPDHVTY TSIIHAHLMA GHLRKARAVF LEMLSKGIFP SVVTYTVLIH SYAVRGRLKL AILHFFEMHE KGVHPNVITY NALINGLCKV
601: RKMDQAYKFF TEMQAKGISP NKYTYTILIN ENCNLGHWQE ALRLYKDMLD REIQPDSCTH SALLKHLNKD YKSHVVRHLE NVIAAGE

Best Arabidopsis Sequence Match ( AT1G22960.1 )
(BLAST)

001: MILCLRLCLR ASRSFFSIST TNNNNNLSRF LFRFSTLPHC AASSSSSSSN LESYYANLIL SSHGDSNKPN RKWSSHQFRL LLTDPNLLIR VLNMIRVKPE
101: IAFRFFNWIQ RQSDVKQSRQ AFAAMLEILA ENDLMSEAYL VAERSIDLGM HEIDDLLIDG SFDKLIALKL LDLLLWVYTK KSMAEKFLLS FEKMIRKGFL
201: PSVRNCNIVL KVLRDSRMMN KASAVYETMI EHGIMPTVIT FNTMLDSCFK AGDLERVDKI WLEMKRRNIE FSEVTYNILI NGFSKNGKME EARRFHGDMR
301: RSGFAVTPYS FNPLIEGYCK QGLFDDAWGV TDEMLNAGIY PTTSTYNIYI CALCDFGRID DARELLSSMA APDVVSYNTL MHGYIKMGKF VEASLLFDDL
401: RAGDIHPSIV TYNTLIDGLC ESGNLEGAQR LKEEMTTQLI FPDVITYTTL VKGFVKNGNL SMATEVYDEM LRKGIKPDGY AYTTRAVGEL RLGDSDKAFR
501: LHEEMVATDH HAPDLTIYNV RIDGLCKVGN LVKAIEFQRK IFRVGLVPDH VTYTTVIRGY LENGQFKMAR NLYDEMLRKR LYPSVITYFV LIYGHAKAGR
601: LEQAFQYSTE MKKRGVRPNV MTHNALLYGM CKAGNIDEAY RYLCKMEEEG IPPNKYSYTM LISKNCDFEK WEEVVKLYKE MLDKEIEPDG YTHRALFKHL
701: EKDHESREVE FLERLLLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g22960, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P0C7Q9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.