CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0060g01220.t01	Wine grape	mitochondrion	60.55	57.96
PGSC0003DMT400007278	Potato	mitochondrion	56.95	54.88
Solyc01g100450.1.1	Tomato	mitochondrion	56.78	54.71
AT1G09820.1	Thale cress	mitochondrion, plastid	53.17	51.16
Bra019985.1-P	Field mustard	cytosol	52.32	49.84
CDX93473	Canola	mitochondrion	52.32	49.84
CDX94941	Canola	cytosol, plastid	52.49	49.76
Zm00001d039548_P001	Maize	mitochondrion	37.05	47.58
GSMUA_Achr3P01360_001	Banana	mitochondrion	41.68	46.82
KXG31660	Sorghum	mitochondrion	27.1	46.2
TraesCS1A01G160000.1	Wheat	mitochondrion	37.56	44.15
HORVU1Hr1G042440.2	Barley	mitochondrion	41.85	42.58
TraesCS1B01G176600.2	Wheat	mitochondrion	42.37	42.08
TraesCS1D01G157200.1	Wheat	mitochondrion	41.17	41.81
Os10t0484300-01	Rice	mitochondrion	40.48	40.83
KRH17313	Soybean	mitochondrion	25.04	30.61
KRH24548	Soybean	mitochondrion	30.7	28.73
KRH72966	Soybean	mitochondrion	30.02	28.46
KRH44246	Soybean	cytosol	23.5	27.45
KRH50360	Soybean	cytosol, extracellular, plastid	25.9	27.16
KRG99196	Soybean	cytosol	24.53	27.08
KRH33556	Soybean	cytosol	9.61	26.79
KRH02112	Soybean	extracellular, mitochondrion	24.87	26.75
KRH51875	Soybean	cytosol	25.9	26.58
KRH54581	Soybean	mitochondrion	22.98	25.19
KRH14574	Soybean	plastid	27.44	25.0
KRH51037	Soybean	endoplasmic reticulum, extracellular, plastid	19.9	25.0
KRH20741	Soybean	cytosol	24.7	24.53
KRH56553	Soybean	plastid	25.9	24.12
KRH16451	Soybean	plastid	28.3	24.02
KRH29553	Soybean	mitochondrion	18.01	23.97
KRH18049	Soybean	plastid	28.13	23.87
KRH13392	Soybean	cytosol	24.01	23.85
KRG90304	Soybean	cytosol	22.64	23.53
KRH45820	Soybean	cytosol, mitochondrion, plastid	29.85	23.45
KRG89236	Soybean	plastid	30.7	23.01
KRH42458	Soybean	plastid	28.3	21.97
KRH58559	Soybean	plastid	21.96	21.84
KRH49758	Soybean	plastid	25.73	21.31
KRH40170	Soybean	mitochondrion	25.04	21.07
KRH34922	Soybean	cytosol	16.12	20.48
KRG93154	Soybean	plastid	26.76	16.34

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100791270	MapMan:35.1	EMBL:ACUP02006789	ncoils:Coil	EnsemblPlantsGene:GLYMA_11G103200
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1LIV3	InterPro:IPR002885	InterPro:IPR011990
EnsemblPlants:KRH29211	ProteinID:KRH29211	ProteinID:KRH29211.1	ProteinID:KRH29212.1	PFAM:PF01535	PFAM:PF12854
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR44149	PANTHER:PTHR44149:SF1	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000233C991	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr11:+:7842215..7847279

Molecular Weight (calculated)

65387.7 Da

IEP (calculated)

8.400

GRAVY (calculated)

-0.161

Length

583 amino acids

Sequence
(BLAST)

001: MVIGKLTGPV QGSVFQSLSI STISELLSNQ HWSELKPHFR TTKPAIFLDQ LFNAGVDSEL VLRFFQWSQK EFRISYGLET TGKVLHLLAN SKKYSKVRSF
101: LDKLVKNEKH TVSSVFHSLL LGGDRPCANA LITDMLVLAY VTNLEIHSAC EVFRRVQDYG FKLSLNSCNP LLSALVKGNE TGEMQYVYKE MIKRRIQPNL
201: TTFNIFINGL CKAGKLNKAE DVIEDIKAWG FSPNIVTYNT LIDGHCKKGS AGKMYRADAI LKEMLANKIC PNEITFNTLI DGFCKDENVL AAKNAFEEMQ
301: RQGLKPNIVT YNSLINGLSN NGKLDEAIAL WDKMVGLGLK PNIVTFNALI NGFCKKKMIK EARKLFDDIA EQDLVPNAIT FNTMIDAFCK AGMMEEGFAL
401: HNSMLDEGIF PNVSTYNCLI AGLCRNQNVR AAKKLLNEME NYELKADVVT YNILIGGWCK DGEPSKAEKL LGEMLNVGVK PNHVTYNTLM DGYCMEGNLK
501: AALKVRTQME KEGKRANVVT YNVLIKGFCK TGKLEDANRL LNEMLEKGLN PNRTTYDVVR LEMLEKGFIP DIEGHLYNIS SMS

Best Arabidopsis Sequence Match ( AT1G09820.1 )
(BLAST)

001: MFPKSLAVSR KNSNLTKGVS GLRRLCSSSS TITGSPCPPR YDVAVIADLI EKQHWSKLGV HVTDINPNEL FRQLISSELD PDLCLRYYSW LVKNSDISVS
101: LELTFKLLHS LANAKRYSKI RSFLDGFVRN GSDHQVHSIF HAISMCDNVC VNSIIADMLV LAYANNSRFE LGFEAFKRSG YYGYKLSALS CKPLMIALLK
201: ENRSADVEYV YKEMIRRKIQ PNVFTFNVVI NALCKTGKMN KARDVMEDMK VYGCSPNVVS YNTLIDGYCK LGGNGKMYKA DAVLKEMVEN DVSPNLTTFN
301: ILIDGFWKDD NLPGSMKVFK EMLDQDVKPN VISYNSLING LCNGGKISEA ISMRDKMVSA GVQPNLITYN ALINGFCKND MLKEALDMFG SVKGQGAVPT
401: TRMYNMLIDA YCKLGKIDDG FALKEEMERE GIVPDVGTYN CLIAGLCRNG NIEAAKKLFD QLTSKGLPDL VTFHILMEGY CRKGESRKAA MLLKEMSKMG
501: LKPRHLTYNI VMKGYCKEGN LKAATNMRTQ MEKERRLRMN VASYNVLLQG YSQKGKLEDA NMLLNEMLEK GLVPNRITYE IVKEEMVDQG FVPDIEGHLF
601: NVSTKS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g09820 [Source:UniProtKB/Swiss-Prot;Acc:O04504]
SUBAcon: [plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.