Factsheet for TraesCS1D01G157200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G160000.1	Wheat	mitochondrion	82.4	95.36
HORVU1Hr1G042440.2	Barley	mitochondrion	92.68	92.84
TraesCS1B01G176600.2	Wheat	mitochondrion	93.9	91.82
Os10t0484300-01	Rice	mitochondrion	76.31	75.78
KXG31660	Sorghum	mitochondrion	44.25	74.27
Zm00001d039548_P001	Maize	mitochondrion	57.84	73.13
GSMUA_Achr3P01360_001	Banana	mitochondrion	43.03	47.59
KRH29211	Soybean	cytosol	41.81	41.17
VIT_14s0060g01220.t01	Wine grape	mitochondrion	42.51	40.07
PGSC0003DMT400007278	Potato	mitochondrion	41.12	39.01
Solyc01g100450.1.1	Tomato	mitochondrion	41.12	39.01
Bra019985.1-P	Field mustard	cytosol	39.9	37.42
CDX93473	Canola	mitochondrion	39.72	37.25
CDX94941	Canola	cytosol, plastid	39.72	37.07
AT1G09820.1	Thale cress	mitochondrion, plastid	38.85	36.8
TraesCS3D01G353400.1	Wheat	cytosol	20.73	29.02
TraesCS2D01G336100.1	Wheat	plastid	23.87	26.14
TraesCS2D01G115600.1	Wheat	cytosol, plastid	25.78	25.3
TraesCS2D01G326200.1	Wheat	mitochondrion	25.26	23.81
TraesCS3D01G203500.2	Wheat	cytosol, mitochondrion	23.69	23.73
TraesCS7D01G103900.1	Wheat	plastid	28.22	23.31
TraesCS4D01G279000.1	Wheat	mitochondrion	25.96	22.96
TraesCS6D01G355100.1	Wheat	plastid	23.69	22.78
TraesCS7D01G362900.1	Wheat	mitochondrion	24.39	22.62
TraesCS2D01G324100.1	Wheat	plastid	18.82	21.51
TraesCS5D01G136000.1	Wheat	plastid	23.87	20.39
TraesCS5D01G237900.1	Wheat	plastid	22.13	19.18
TraesCS2D01G229300.1	Wheat	mitochondrion	24.91	19.17
TraesCS7D01G134400.2	Wheat	mitochondrion	21.43	18.36
TraesCS4D01G259600.1	Wheat	cytosol	24.56	17.87

Protein Annotations

EnsemblPlants:TraesCS1D01G157200.1	EnsemblPlantsGene:TraesCS1D01G157200	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR44149	PANTHER:PTHR44149:SF1
PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:221884623..221886347

Molecular Weight (calculated)

62507.5 Da

IEP (calculated)

9.447

GRAVY (calculated)

-0.005

Length

574 amino acids

Sequence
(BLAST)

001: MPLRTLLRHL AAGQFARLQA LTGAATAPAA HRVLHLLLRT APAPPLPHLV SLARWSRSHF RAPLPLRLHA LLLARLASHG LHPLLRSELH ALAAARLHSP
101: ASIVRALPAA SPAAAPLIAD MLVLALARAS QPLAAYEAFL LLGDNHPRHR PSAFSVNSLL SALFAADRVD LAERAFKAAL RRRVSPDLFT FNIVVSGLCK
201: AGQLRKAGDV AKDIRAWGLT PSVATYNALI DGYCKKGRVG RMYHVDALLK EMVEAGISPN VVTFNVLVTG YCQDSNTAAA VKVFEEMKQQ GIAPSMGTYN
301: ALVWGLCCEG KVEEGVKLVD EMQDLGLAPN VATLNSVLNG FCKKGLMADA ENWVDGMAQR NVEPNVVTYN TLMDGYRRLG KMMDTAAVKE AMAGKGISPN
401: VRTYNCLIAG FDQSGDWGSV SGLLDEMKDK GVRADIVTYN TLIGALCCKG EVRKAVKLLD EMLMVGLEPE HRTYNNIING YCEKGNIKSA YEIRARMEKG
501: RKRANVVTYN VFIKHLSRMG KMEEANELLN EMLEKGLVPN KVTYETIKEG MMEKGYVPDV RGLACSEASQ NLTS

Best Arabidopsis Sequence Match ( AT1G09820.1 )
(BLAST)

001: MFPKSLAVSR KNSNLTKGVS GLRRLCSSSS TITGSPCPPR YDVAVIADLI EKQHWSKLGV HVTDINPNEL FRQLISSELD PDLCLRYYSW LVKNSDISVS
101: LELTFKLLHS LANAKRYSKI RSFLDGFVRN GSDHQVHSIF HAISMCDNVC VNSIIADMLV LAYANNSRFE LGFEAFKRSG YYGYKLSALS CKPLMIALLK
201: ENRSADVEYV YKEMIRRKIQ PNVFTFNVVI NALCKTGKMN KARDVMEDMK VYGCSPNVVS YNTLIDGYCK LGGNGKMYKA DAVLKEMVEN DVSPNLTTFN
301: ILIDGFWKDD NLPGSMKVFK EMLDQDVKPN VISYNSLING LCNGGKISEA ISMRDKMVSA GVQPNLITYN ALINGFCKND MLKEALDMFG SVKGQGAVPT
401: TRMYNMLIDA YCKLGKIDDG FALKEEMERE GIVPDVGTYN CLIAGLCRNG NIEAAKKLFD QLTSKGLPDL VTFHILMEGY CRKGESRKAA MLLKEMSKMG
501: LKPRHLTYNI VMKGYCKEGN LKAATNMRTQ MEKERRLRMN VASYNVLLQG YSQKGKLEDA NMLLNEMLEK GLVPNRITYE IVKEEMVDQG FVPDIEGHLF
601: NVSTKS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g09820 [Source:UniProtKB/Swiss-Prot;Acc:O04504]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.