Factsheet for TraesCS5D01G237900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G229600.1	Wheat	mitochondrion	90.33	96.45
TraesCS5B01G228400.1	Wheat	plastid	93.5	95.23
HORVU5Hr1G066340.2	Barley	mitochondrion	88.52	94.52
HORVU0Hr1G013090.3	Barley	cytosol, plastid	78.25	89.46
Os09t0417500-01	Rice	mitochondrion	69.18	74.11
Zm00001d020436_P001	Maize	mitochondrion	67.07	69.92
EER96725	Sorghum	mitochondrion, plastid	67.22	69.86
VIT_17s0000g06480.t01	Wine grape	cytosol	17.52	42.65
KRH54581	Soybean	mitochondrion	28.1	34.96
CDX87212	Canola	plastid	31.72	32.76
Bra035931.1-P	Field mustard	mitochondrion	30.66	31.38
AT5G61400.1	Thale cress	mitochondrion	30.97	31.35
Solyc06g069700.2.1	Tomato	plastid	35.65	29.28
TraesCS2D01G336100.1	Wheat	plastid	20.54	25.95
TraesCS3D01G353400.1	Wheat	cytosol	15.11	24.39
TraesCS4D01G279000.1	Wheat	mitochondrion	22.81	23.27
TraesCS5D01G136000.1	Wheat	plastid	23.57	23.21
TraesCS2D01G115600.1	Wheat	cytosol, plastid	19.79	22.39
TraesCS7D01G362900.1	Wheat	mitochondrion	20.69	22.13
TraesCS1D01G157200.1	Wheat	mitochondrion	19.18	22.13
TraesCS2D01G229300.1	Wheat	mitochondrion	23.26	20.64
TraesCS7D01G103900.1	Wheat	plastid	20.69	19.71
TraesCS6D01G355100.1	Wheat	plastid	17.37	19.26
TraesCS7D01G134400.2	Wheat	mitochondrion	19.18	18.96
TraesCS2D01G326200.1	Wheat	mitochondrion	17.37	18.88
TraesCS3D01G203500.2	Wheat	cytosol, mitochondrion	16.31	18.85
TraesCS4D01G259600.1	Wheat	cytosol	22.36	18.76
TraesCS2D01G324100.1	Wheat	plastid	12.84	16.93

Protein Annotations

EnsemblPlants:TraesCS5D01G237900.1	EnsemblPlantsGene:TraesCS5D01G237900	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF793
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr5D:+:345978100..345980088

Molecular Weight (calculated)

71970.0 Da

IEP (calculated)

8.385

GRAVY (calculated)

-0.013

Length

662 amino acids

Sequence
(BLAST)

001: MLLAQPHQQA ECSPRKPRQS NSQSNRSRAA QICRLANANP MPLSSPLRLI LSSRRRPLAT HHRCLSSSSA AAVAAATPAT SRDRAAHLAA AVHGSAAAKN
101: FAHAIRLTKS LVQASSPGAR PGAAAFAALA STSGSPGPAL GVLVIALSQM ALHDEALSVF HRLPTLPALP ACNATLDVLV RAHRFDRVWK LFDEMLSRGM
201: VPTVVTYNTL INACRHEGAV AKAWQVWNQM AARRIGPNVV TYSTMISALC DEGCIGEAEQ LFLAMKQTGM RPNHYTYNAL MSSHCKRDGI NRALTLYQEL
301: LKSGLVPNAV IFTTLIDGFF QVNRISDAKN IFLDMHRYGV APTVPVYNSL IDGAFRSGDS QEALTVYEDM TRLGLCPDEF TCSIIVRGLC SGGQVQVAAR
401: FLEAMQQSGI NLNAAAYNAL IDEYCKNGDL AEALATCTIM SGVGIEPNVV TYSSLIDGHS KKGKMEIAMA IYTEMIAKGV EPNVLTYTAL IHGHAKDGDI
501: NAAFRLQKEM AEKGISPNSV TVSVLVDGLC RENRIQDAVM IFMKHSGQKK HADIRTYLSN STTEEDHSIP NSVTYMTLIY GLYLDGQYRE AGKFFSCMRE
601: SGMVPDSFTY SLLIRGQCML GYVLNAMMLY ADMVKVGVKP MTTVCPDIWS RDAPNDLKTV ET

Best Arabidopsis Sequence Match ( AT5G61400.1 )
(BLAST)

001: MLKLLLPQHR TSVYLFKFQF FNFRFLSQSP SLSNSASSFS SSSLAEAILK CRSAEEAFKL FETSSRSRVS KSNDLQSFSA VIHVLTGAHK YTLARCLIKS
101: LIERLKRHSE PSNMSHRLFN ALEDIQSPKF SIGVFSLLIM EFLEMGLFEE ALWVSREMKC SPDSKACLSI LNGLVRRRRF DSVWVDYQLM ISRGLVPDVH
201: IYFVLFQCCF KQGLYSKKEK LLDEMTSLGI KPNVYIYTIY ILDLCRDNKM EEAEKMFELM KKHGVLPNLY TYSAMIDGYC KTGNVRQAYG LYKEILVAEL
301: LPNVVVFGTL VDGFCKAREL VTARSLFVHM VKFGVDPNLY VYNCLIHGHC KSGNMLEAVG LLSEMESLNL SPDVFTYTIL INGLCIEDQV AEANRLFQKM
401: KNERIFPSSA TYNSLIHGYC KEYNMEQALD LCSEMTASGV EPNIITFSTL IDGYCNVRDI KAAMGLYFEM TIKGIVPDVV TYTALIDAHF KEANMKEALR
501: LYSDMLEAGI HPNDHTFACL VDGFWKEGRL SVAIDFYQEN NQQRSCWNHV GFTCLIEGLC QNGYILRASR FFSDMRSCGI TPDICSYVSM LKGHLQEKRI
601: TDTMMLQCDM IKTGILPNLL VNQLLARFYQ ANGYVKSACF LTNSSRLKTV SNSC

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g61400 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLJ4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.