Factsheet for TraesCS2D01G115600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G114800.1	Wheat	plastid	89.57	97.4
TraesCS2B01G133900.1	Wheat	plastid	89.57	97.4
HORVU2Hr1G019920.1	Barley	cytosol	61.03	95.45
EER99880	Sorghum	cytosol	65.98	80.75
Zm00001d007125_P001	Maize	endoplasmic reticulum, plastid	71.62	78.03
Os07t0671200-00	Rice	extracellular	72.99	77.5
HORVU2Hr1G019880.2	Barley	cytosol	47.01	76.39
Zm00001d007127_P001	Maize	endoplasmic reticulum, plastid	67.86	76.2
Zm00001d007129_P001	Maize	endoplasmic reticulum, plastid	69.91	76.16
GSMUA_Achr11P...	Banana	cytosol	44.96	53.56
KRH33556	Soybean	cytosol	14.87	41.63
VIT_08s0040g01530.t01	Wine grape	cytosol	41.54	39.19
PGSC0003DMT400027103	Potato	cytosol	26.84	38.39
Solyc10g084080.1.1	Tomato	cytosol, extracellular	31.11	35.48
KRG90304	Soybean	cytosol	33.85	35.29
CDX79463	Canola	plastid	37.09	35.17
Bra022891.1-P	Field mustard	plastid	36.41	34.69
CDX84733	Canola	plastid	36.24	34.53
AT2G32630.1	Thale cress	mitochondrion, plastid	36.75	34.46
TraesCS3D01G353400.1	Wheat	cytosol	19.15	27.32
TraesCS1D01G157200.1	Wheat	mitochondrion	25.3	25.78
TraesCS2D01G336100.1	Wheat	plastid	22.22	24.81
KRG93154	Soybean	plastid	38.97	23.87
TraesCS2D01G326200.1	Wheat	mitochondrion	23.42	22.5
TraesCS7D01G103900.1	Wheat	plastid	26.5	22.3
PGSC0003DMT400027113	Potato	cytosol, plastid	38.46	22.28
TraesCS7D01G362900.1	Wheat	mitochondrion	23.42	22.13
TraesCS4D01G279000.1	Wheat	mitochondrion	24.44	22.03
PGSC0003DMT400027098	Potato	cytosol	23.08	21.84
AT2G28050.1	Thale cress	cytosol, plastid	17.09	21.64
TraesCS7D01G134400.2	Wheat	mitochondrion	24.1	21.04
PGSC0003DMT400040701	Potato	mitochondrion	18.97	20.18
TraesCS5D01G136000.1	Wheat	plastid	22.73	19.79
TraesCS5D01G237900.1	Wheat	plastid	22.39	19.79
TraesCS2D01G324100.1	Wheat	plastid	16.75	19.52
TraesCS6D01G355100.1	Wheat	plastid	19.66	19.26
Solyc06g010270.1.1	Tomato	mitochondrion	14.7	18.57
TraesCS4D01G259600.1	Wheat	cytosol	24.79	18.38
TraesCS2D01G229300.1	Wheat	mitochondrion	23.08	18.1
TraesCS3D01G203500.2	Wheat	cytosol, mitochondrion	17.61	17.98
Solyc10g084090.1.1	Tomato	cytosol	39.32	17.2

Protein Annotations

EnsemblPlants:TraesCS2D01G115600.1	EnsemblPlantsGene:TraesCS2D01G115600	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF418
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	SEG:seg	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr2D:-:64066407..64068164

Molecular Weight (calculated)

63708.2 Da

IEP (calculated)

8.112

GRAVY (calculated)

-0.133

Length

585 amino acids

Sequence
(BLAST)

001: MTFDVCTIQP TKTKARHEAD KPRLKQKARP SPTSPIPPPP SSAADGTMAS VPGTRPAPLA AFASLLAARR FGAAKSMLPS LLTPTLLAVP FADLAAGSLP
101: RAAPRHAVAA FHDMLFCAYA DAGAPERAAE ALDLTVSRLG SLDPRSLTSS LLSLRRTGHL LPAAELLRKA LASCPGSITP LSASVVVDGF CKAGRMDDAR
201: RLLDEMPRHG VKLNACCYNS LLDSYTRQKN DGRVAEVLKE MESGGVEPTV GTYTILVDGL SMAGDISKVE SVFDEMKRKN VAGDVYFYSA VINAYCRAGN
301: VRRASEVFDE CVGNGIEPNE RTYGALINGF CKIGQIEAAE MLLTDMQLRG VGHNQIVFNT MIDGYCRLGM VDKALEIKAV MERMGIQLDV YTYNTLACGL
401: CRVNRMEEAK KLLHIMTENG VESNYVSYTT LIGIHSKEGD MVEARRLFRD MEGKGSRPSV VTYNVMIDGY IKNGSIREAE RFKKEMEKKG LVPDVYTYAA
501: IVHGHCVNGK VDVALRLFEE MKLRGAKPNV VAYTAMISGL AKEGRSEEAF QLYDNMLAAG LTPDDTLYSM LVGSLHTDKR KHEIP

Best Arabidopsis Sequence Match ( AT2G32630.1 )
(BLAST)

001: MNMSSSSRKL SRLFNIVTQN QKSPVLLSSD QEAARRITAC LVEKSTIGKL QSNPSLLFNL NSNVTRLVLS EPTLPTQSCI DFFKLLREFE SNLKPDLTAV
101: VTLSHRLYSN RRFNEMRSLL NSVVNDGFYK RPVEELGSAM VDCDISEEKF EFFEKFFDLV FRVYVDNGMF EEGLRVFDYM VKKGLSIDER SCIVFLVAAK
201: KRRRIDLCLE IFRRMVDSGV KITVYSLTIV VEGLCRRGEV EKSKKLIKEF SVKGIKPEAY TYNTIINAYV KQRDFSGVEG VLKVMKKDGV VYNKVTYTLL
301: MELSVKNGKM SDAEKLFDEM RERGIESDVH VYTSLISWNC RKGNMKRAFL LFDELTEKGL SPSSYTYGAL IDGVCKVGEM GAAEILMNEM QSKGVNITQV
401: VFNTLIDGYC RKGMVDEASM IYDVMEQKGF QADVFTCNTI ASCFNRLKRY DEAKQWLFRM MEGGVKLSTV SYTNLIDVYC KEGNVEEAKR LFVEMSSKGV
501: QPNAITYNVM IYAYCKQGKI KEARKLRANM EANGMDPDSY TYTSLIHGEC IADNVDEAMR LFSEMGLKGL DQNSVTYTVM ISGLSKAGKS DEAFGLYDEM
601: KRKGYTIDNK VYTALIGSMH SPET

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g32630 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8P6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.